Salvelinus sp. IW2-2015 (Arctic char): 111963721
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Entry
111963721 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: lumican-like
KO
K08122
lumican
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111963721
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
111963721
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
Motif
Other DBs
NCBI-GeneID:
111963721
NCBI-ProteinID:
XP_023842989
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Position
LG1:26179438..26197403
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AA seq
376 aa
AA seq
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MAVQVSVLSLVLSLALGLMLSVCRPVCGTPGTFQDLDYGGVPLWINRLLGEPSVFSLRGR
MDRAWYRANNPQSCPDLCDCPIQWPSALYCDHRDLGELPDSMLYNTQYLFLQGNNISSVP
SSSLTNSSGLRWLILDDNRLQTDGLQTSTLQNLTRLQYLFLNHNKLTVVPSGLPRSLRQL
RLAHNLLTSISPGTFGNLHNLTLLLLQGNRFNMITETDFTGLVSLNLLNLSENLFSSFPS
HLPPSIQQLYLSNNSLSGLGEESLQGFTNLRYLRLSHCGLVSPSLHPQSFNLSSLVELDL
SYNKLTTIPLVPLTLQYLYLEANRIQEFNISSFCREVGPLSYSRMRILRLDGNKMSYHLL
PPEWVYCLRVLHHIYI
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacaagtgtcggtgctgtccctagtcctcagtctagccctgggcctgatgctg
agtgtctgcaggcctgtgtgtggcaccccagggacattccaggacctggactatggaggg
gttcctctctggatcaaccgtcttctgggggaaccctctgtattcagcctgaggggtcga
atggaccgggcatggtacagagccaacaacccccagtcctgccctgacctgtgtgactgt
cctatccagtggccctcagctctgtactgtgaccacagagacctgggagagctgccggac
agcatgctttacaatacacaatacctgttcctgcagggcaacaacatctcgtccgtgccc
tcctcctctctcaccaactcctcaggactccgctggctcatcctggatgataaccgtctg
cagacggacgggctgcagacctccacgctgcagaacctgacccggctccaatacctgttc
ctcaaccacaacaagctgactgtcgtgccctctggcctgcccaggagcctgcggcagctc
cgactggcacacaacctcctcaccagcatctccccaggaacctttgggaacttacataat
cttacattgctgctactgcaggggaataggttcaacatgattacagagactgacttcaca
ggcctggtgtctcttaacctgttgaacctgagcgagaacctcttctcctccttcccctcc
caccttcctccctccatccagcagctctacctctccaacaactctctgtctggcctgggg
gaggaaagtctacagggcttcactaatctcaggtacctgcgtctgagccactgtggtcta
gtgagcccttccctccacccccaatccttcaacctgtcttcccttgtggagctggatctg
tcttacaacaagctgacaaccatccccctggttcccctcacactacagtacctatacttg
gaggccaaccgcatacaagagtttaacatctctagtttctgtcgggaggtgggtcctctg
tcgtactccaggatgaggatccttcgtctggacggcaacaagatgtcctatcatctacta
ccacctgaatgggtctactgcctccgagtcctgcaccacatatacatctaa
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