Salvelinus sp. IW2-2015 (Arctic char): 111964062
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Entry
111964062 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111964062
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111964062
Spliceosome [BR:
salp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111964062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
ATPase
nSTAND3
AAA_22
PhoH
AAA_16
AAA_7
AAA_30
SRP54
Motif
Other DBs
NCBI-GeneID:
111964062
NCBI-ProteinID:
XP_023843513
LinkDB
All DBs
Position
LG5:complement(22269443..22296430)
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AA seq
1459 aa
AA seq
DB search
MSRPSNASPKPAMGKSKHSGGGGPRGKGLKDIRIDEEVKIAVNISLERFQYSEQKEMEFP
SSLSSTERAFIHRFAQSLGYISKSRGKGSSRTLTIRKKDGSETAQSIMTFNLSHNSKHAV
RSLLQRFPITNKERTDLLPRTERGLSVAIEAESSRDKNRTSGRLNNGIPQVPQKRGPSEL
DFFRRSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSRNGIPCRIFCT
QPRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTT
MSTVTHVIVDEVHERDGLSDFLLTKMRDMLQTMPNLKLILSSAALDVELFLRYFGSCPVI
HIKGRPFEVKQLFLEDILRTTGYSNKDMRKYKKEIQREEKQQTSLTEWCKVREGGFRQEP
QREKTTSASCVLQENDLLDDGGDSVFTQLNEKDVASLDPWLLKEMDACISDIFLNQDADA
FVQLFNLILSENVSVDYMHSETSATPLMVAAGRGFLSHIEQLLSMGASVRIKASNGWTAL
DWAKHFQQAEVVDLLESYLSSLEAGKLDEWSLVQAATTEMSPEDQELLKEYHHSFDDERV
DLDLIMHLLHNICTSSEDGAVLIFLPGYDEIVGLRDRILYDDKRFTDHSQRYQVFTLHSN
MQTSDQKKVLRNTPAGVRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLK
MVWISKASSLQRKGRAGRCRPGICFHLFSHLRFNNMLEYQVPQLLRMPLQELCLHTKLLA
PITCSIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAF
QAWQKARTDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLN
SENWSVVKAALVAGMYPNLIHVDRESCSLSGAKEKRVRFHPTSILSQPQPHKKIPPANGQ
VAAVQSLPTDWLIYDEMTRAHRIASIRCCSVVSPITIAIFGGCAKLPSTALQEPAVQKDD
VVNESSDSEIEDRSTANLAQMKIDEWLNFKLDKEVRIKMVGLVFQLRQKWHGLFLRRIRS
PSKPWSQLDEATIRALVSVLGAEDQTAGLQQPTGIGQRPRPMSSEEPPQTSSWRNANSRR
TSGPTASPDIPELPDEPLIPAPSHTATDRSSRLSPASALLHPKAPHGSRDKGSRRPTEDH
SSTPKSPESASLGFPSPCPSPSPTSSGKCSKSPSPRPGVAPVRYFIMKSSNLRNIDISQQ
RGIWSSTPSNELKLNRAFLESSLVFLVFSVQGSGHFQGYARMTSVIGQERCQDWGSTGLG
GVFSVEWTRKESLPFQCTHQLLNPWNDNKKVQISRDGQELEPQAGGQLLQLWERLRETTA
TTTATRAMRDCTDLQDLTT
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtcctagtaatgcctcacccaagcctgccatgggcaaatcaaaacactctggt
ggtggggggcccaggggcaaagggctgaaagacatacgcatcgacgaagaagttaagatt
gctgtcaacatctcccttgagaggtttcagtacagtgagcaaaaagaaatggagtttcct
tcctccctgtctagtactgagagagccttcatccatcgctttgcacagtcccttggatat
atctctaaaagcagaggaaaaggatcaagccggaccctcactatcagaaagaaggatggc
tcagagactgcccagtccatcatgactttcaacctttcccacaattccaagcacgcggtg
cggagcctgctgcagaggttccccatcaccaacaaggagcgcacagacctactgcctcgc
actgagaggggcctgtctgtggccattgaggctgagagcagccgtgacaagaacaggacc
agtgggcggctcaacaatggcattccacaggtgccccagaagaggggcccatctgaactg
gacttcttccgccgctcgcttcctgtgtacgagcgccaggaggagatcgtccaggtcatc
aaagacaaccgtgttgtcctagtggtgggggagaccggctcggggaaaactacacagatt
ccacagttcctcctggacgactgcagccgaaatgggatcccctgtcggatcttctgcaca
cagccccggcgtctggcagccatcgctgtggcagagcgggttgctgcggagagaggggag
agcatcggtcagaccattggctaccagatccgcctggagagcagagtttctcctaagacg
ctgctgaccttctgcacaagtggagtcctgctgagaacactgatggccggagacaccaca
atgtccactgttactcacgtcattgtggatgaggttcacgagcgggatggtctgagtgac
ttcctgctgaccaagatgagggacatgctccagacgatgcctaatctgaagctcatcctg
tccagtgctgccctggacgtggagctgttcctccgctactttggctcctgtcctgtcatc
cacatcaaaggaagaccatttgaggtgaagcaacttttcctggaagacatcttgaggaca
acaggctattcaaacaaagacatgaggaaatacaaaaaggagatccagagggaggaaaag
caacagacgtctttgacagagtggtgtaaggtgcgtgagggcggcttccgccaggagccc
cagagggagaagaccacctcggcctcctgtgtccttcaggagaacgacctgctggacgac
ggaggggacagtgttttcacccagctgaatgagaaagatgtggcatcattggacccgtgg
ctgctgaaggagatggatgcctgcatctcagacatcttcctcaaccaggacgctgacgcc
ttcgtccagctcttcaatctcatcctgagtgagaacgtcagcgtggactacatgcacagt
gaaacgagcgccactccactcatggtggcagcaggtcgaggcttcctcagtcatattgag
cagcttttgagtatgggagccagcgtcagaatcaaggcctccaatggctggactgcgctg
gactgggccaagcacttccagcaggcagaagtggtggacctactagaatcctacctctca
tccctggaggcggggaagctggacgagtggtccctggtgcaggctgccaccacagagatg
agcccggaggaccaggagctgctcaaggaataccaccacagctttgacgatgagagggtg
gacctggacctcatcatgcacctgctgcacaacatttgcaccagctcagaagacggtgcg
gttttgatcttcctccctggatacgatgagatagtgggtctgagggaccgtatcctgtac
gacgataaaagattcacagaccactctcaaaggtaccaggtctttacactccactccaac
atgcagacctcggatcagaagaaagtgctgaggaacactccagctggagtccggaaaata
attctctccactaacatcgcagagacaagtatcactgtcaacgatgtcgtatttgtcatt
gacgcaggaaaagtaaaagagaagtcctttgatgccctgaaccatgtgaccatgttgaag
atggtgtggatctccaaggccagctctctgcagaggaagggcagagctggacgttgccga
ccagggatctgcttccacctcttcagtcatctccgctttaacaacatgctggagtaccag
gtgccccagctactgaggatgcccctgcaggaactctgtctccacaccaagctgttggcc
ccaatcacctgttccatcgctgaattcctgtccaaagcacctgaaccacctcccatcctc
attgtaaaaaacgcggtgcagatgctcaagaccatagatgccatggacccgtgggaggac
ctgacggagctgggctaccacctggctgacctgcctgtggagccccacctgggcaagatg
gtgctgtgtgccgtggtgctgaagtgcctagaccccatcttgaccatcgcctgcacgctg
gcccatcgcgacccctttgtgctgccctcccaggcctcccagaagagggcatccatgctg
tgccggaagcgctttactgcagggaccttcagcgaccatatggccctgctccgagccttc
caggcttggcagaaggcccgcaccgatggctgggaaaggtccttctgtgagaagaacttc
ctgtcccaggctaccatggagatcatcatagggatgaggacccagctgctaggacagctc
cgagccataggctttgtgcgggcacggggcggcggggacatccgtgacgtgaacctgaac
tctgagaactggtcagtggtgaaggcagccctggtggccggaatgtaccccaacctgatc
catgtggaccgtgagagctgttctctgtctggggccaaggagaagagggtccgcttccac
cccacctccatcctcagccagccacagccccacaagaagatccccccagccaatggtcag
gtggcagccgtccagtccctgcccaccgattggttgatctatgacgagatgacgcgagcc
cataggatagctagcatccgctgctgctctgtggtctcccccataaccatagccatcttc
gggggctgtgccaaactgcccagcacagccctacaagaacctgctgttcagaaagatgac
gtggtgaatgagagcagtgacagtgagattgaggatcgctccacagccaacctggctcag
atgaagatcgacgagtggctcaacttcaaactggacaaagaggtgaggatcaagatggtg
ggtctggtgttccagctgaggcagaagtggcacggtttgttcctgaggaggatccgctcc
ccctccaagccctggtcccagctggatgaggccaccatacgggccctggtgtcggtgctg
ggggctgaggatcagactgcagggctgcagcagcccacagggattggccagaggccccgg
cccatgtcctctgaggagcccccccagacctcctcctggaggaacgccaacagcaggaga
acctccggccccacagccagccctgacatcccagagctccctgacgaacccctcatcccc
gccccctcacacacagccacagacaggtcctccagactctcccctgcctcggccctcctg
caccccaaagccccccatggcagcagggacaagggctccaggcgccccacagaagaccac
tcctccacccccaagtctcctgaatcggcttcactcggcttccccagcccctgtcccagc
ccctcccccacctcatcaggaaagtgctccaagtctccgtccccgaggccaggcgttgca
ccggtgcgttacttcatcatgaagagcagcaacctgaggaacattgacatctcccagcag
agaggaatctggtcttccacgcccagcaacgagctcaaactcaacagagccttcctggag
agcagcctggtcttcctggtcttctctgtgcagggctccggacacttccagggctatgca
cggatgacgtctgtcattggacaggagcgctgtcaggactggggctccacagggctgggg
ggggtcttcagtgtggagtggaccaggaaggagagcctgcccttccagtgtactcaccag
ctgctcaacccctggaatgacaacaagaaggtgcagatcagcagagacggacaggagttg
gagccccaggctggaggccagctgctgcagctgtgggagagactcagggaaaccacagca
accacaacagcaacacgagccatgagagattgcactgaccttcaggacctcaccacttga
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integrated database retrieval system
