Salvelinus sp. IW2-2015 (Arctic char): 111964103
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Entry
111964103 CDS
T05762
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111964103
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
111964103
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
HHH_3
CUE
T2SSK
Motif
Other DBs
NCBI-GeneID:
111964103
NCBI-ProteinID:
XP_023843595
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All DBs
Position
LG5:complement(25574609..25586721)
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AA seq
945 aa
AA seq
DB search
MNQRRFINHNTDSVNEDLTGQQTHDTVVPETPELKRPPGPGSVRGMESVVLDSDSDEEIS
GSSMMLSGKSLEKEAVTGAVIILSDEEGEEMRTSLQRNGSQLPKNISGSQDPDRKRRLEV
CDSSQQSGASNSSKKPALEEDSVTDDSEDEGPEPSWKSQEDMVRKLQTKFPRLVKEELRE
VLLEHDWHFEDTLEALHMFSEEGGRSSQGDTQASSSASSAPQASAHQAGPAAEPPGCPTS
LPHKPPSGTGEKPISRPTKGADRRRRVIPEPGTSSEDEASDDFDESAEGVELNSDSSDQE
VGTRSLVKDQILRFFQEASLDELSLISGCSVKKAQRIVELRPFNEWEDLLDALDRGNGLS
TDLVQGCRVVLRERDVVRSLMTKCEKIANKMMQDVTQVVERDKGSQKQPEILNGKYQLKP
YQLIGQNWLTLLHQNNLSGILADEMGLGKTIQAISFLASLYQEGNKGPHLLTVPASTLDN
WVRELNLWCPRLKVLVYYGSVEDRKYLRYDILNRQVDYNIIISTYALTTSNDNDRSLFRK
LKLEYAVFDEGHMLKNMSSLRYRHLMAINAKYRLLLTGTPVQNNLLELMSLLNFIMPDMF
SSSTSQLANMFAMKSSEEQSSFEMERISHAKLIMKPFILRRVKSEVLKQLPAKEEKVEFC
AMSDQQQQLYNALMQKLKGSTNGEKRELTNVMMQLRKMANHPLLHREHYTTTKLAAMSQL
MLKEPTHCEADPALIKEDMEVMTDFELHRLCLQYPSVQDYQLDTDMLLDSGKLSLLTQLL
ASLKTKGDRVVLFSQFTMMLDILEVFLKHLKHHYIRLDGSTPMSDRIVLIDQYNTELDIF
VFLMSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTRTVKVIKLISKDSI
EDGMLRIGQKKLKLEQDMTASESQDGDEDSIPEDMASLLKASLGL
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaagaagatttatcaaccataacacagactcagtgaatgaagatctcacgggg
caacaaacacatgatactgttgtcccggagaccccagagctcaaacgtcccccagggccc
ggctcagtgagaggcatggaaagcgtggtactagactctgattcagatgaggagatatca
gggtcttccatgatgttgtcggggaagagtctggaaaaggaagccgttacgggtgctgtt
atcatactgtcagatgaggagggagaggagatgagaacctctctacagagaaatggcagc
cagctccccaaaaacatatcgggaagtcaagacccagaccggaagaggagactagaggtg
tgtgacagctcccagcagagtggcgcatcaaactccagcaagaaaccagcccttgaggag
gattcagtgacagatgattctgaggatgagggtccagagcccagctggaagagccaggag
gacatggtgaggaaactgcagactaagtttccccgtctggtcaaggaggagcttagagaa
gtgcttctcgagcatgattggcactttgaggacaccctagaagcactgcacatgttttca
gaggagggggggaggtccagtcaaggggatacccaggcatcatcatcagctagttcagcc
ccccaagcctcagcacatcaggcaggcccagcagccgaaccccctggttgtcccacatca
ctacctcacaagcctcccagtgggaccggagagaagcccatcagtaggccgaccaaagga
gcagacagaaggaggagggtgattccagagccaggcaccagctctgaagacgaggccagt
gatgactttgatgaatctgctgagggcgtggagctgaactctgatagctcagatcaggag
gttggaacaaggtctcttgtgaaggaccagatcctcaggttcttccaggaggcatcgctg
gatgagctgtctctcatctctggctgctctgtgaagaaggcccagaggattgtcgagctg
cgcccatttaacgagtgggaggatctgttggatgctcttgacagagggaacggcctctcc
actgatctggtgcagggctgccgtgtggtcctgagagaacgggacgttgtgcgcagcctc
atgaccaagtgtgagaaaatcgccaacaagatgatgcaggatgtgacccaagtggtggag
agggacaagggctcccagaaacagcctgagatcctcaacgggaaataccagttgaagcct
tatcagctcattggtcaaaattggctgaccctgctccatcagaacaacctgagtggaatc
cttgctgatgagatgggtttggggaagaccatccaggccatctcgttcctggccagcctg
taccaggagggcaataagggcccacatctcctcactgtacctgcctccacactggataat
tgggtgcgggagctgaatctgtggtgtcccaggctcaaagtcctggtgtactatgggtct
gtggaggatcgcaagtaccttcgatatgatattctcaacagacaggtcgactacaacatc
atcatttccacgtacgctctgaccaccagcaacgacaacgaccgcagcctgttccgaaag
ctcaaactggagtacgccgtgttcgatgagggccacatgctgaagaacatgagctcgctg
cgctaccgccacctcatggccatcaacgctaagtaccgtctgctgctgactgggactcca
gtgcagaacaacctcctggagctcatgtccctgctcaacttcatcatgcccgatatgttc
tccagcagcacttcacagctcgccaatatgtttgccatgaaatcatcagaggagcagagc
agctttgagatggagaggatctctcatgccaaactgatcatgaaacccttcatcctcaga
cgtgtcaagagtgaggtgctgaagcagctcccagccaaagaggagaaggtggaattctgt
gccatgagtgaccagcagcagcagctctacaatgccttaatgcagaagctcaagggatcc
accaatggagagaagagagaactgaccaatgtgatgatgcagttgaggaagatggcaaat
catccactgctgcaccgggagcattataccactaccaaactggctgctatgagtcaactc
atgctcaaggagccgacccactgtgaagcagacccagcactgatcaaggaggacatggag
gtcatgacagactttgagctgcatcgactttgtcttcagtacccgtccgtacaagactat
cagctggacacagacatgctcctggactcaggaaaactcagcctgctcacacagcttctg
gcctctctcaaaaccaagggggatagagtggtgctcttcagccagttcaccatgatgctg
gacattctagaggtgttcctgaagcacttgaagcatcactacattcgactggatggatca
acgcccatgtctgacagaatcgtgctgattgaccagtacaacacagagttggacatcttt
gtgttcttgatgtctactaaggctggtggcctgggcatcaacctgacctcagccaatgtg
gtcatcttgcacgacattgactgcaacccctacaacgataagcaggccgaggaccgctgt
caccgtgtcggacagacaaggactgtgaaggtgatcaagctgatcagtaaggactctata
gaggatggcatgctccgcatcggtcagaagaaactcaaactggagcaggatatgactgct
tccgagtcccaggacggagatgaggactcgataccagaagacatggcctcccttctgaag
gcatcactggggctgtga
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