KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111964176
Entry
111964176         CDS       T05762                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111964176
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:salp03041]
    111964176
   04121 Ubiquitin system [BR:salp04121]
    111964176
Spliceosome [BR:salp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    111964176
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    111964176
Ubiquitin system [BR:salp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    111964176
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 111964176
NCBI-ProteinID: XP_023843714
LinkDB
Position
LG5:28104357..28111176
AA seq 780 aa
MGSSKKHKEKGRDKDKDAEERGHREHKKHRHKDRERDKERDSNREREKRKRSRSKERSGR
GSERDGRSKGERSTGEPRVKKEKVEPGCEGTEIAPQSASGDASLTIEETNKLRAKLGLKP
LEMTDTTKELGTKEQPIVAETINPVYIKQQKEMREKLAALKEKRLLNKKLGKVKTLAEED
WLDDTVAWVERSRKMAKEKELAEKRAKLLQEMDEEFGVSNLVEEEFGQTNKAAYSSRDLK
GLTVQHKMESFNEGETVILTLQDKGVLDEEGGDVLVNVGLVDKENAEKNVELKKKKPDYK
AYEEDESVDDMVTFKPRTVLGKYDEEIDGEKKKSFRLSKGGCAEGERERELLAIRETLRN
QAQSLEMPALAIASEYYTPQEMVGFKKTKQRVRKIRKKEKALPDELQLDDTRNTDFGSRA
RGRGRKQLDEEGQEGVKERVIIPGLDVPQQSDDIRMADMDISDDENFTPPDPAVLEEDEA
EQELQKQLEKQRKLKQKQLLKNSGEKVAEQVRGLARGDDSDDEEDKNNLNIVFNATSEFC
RTLGDIPTYGLSGNREDQEDIMDFEQEAERDGAGGSDSDGDENVGWSIVNVDEEQKQPDF
ATASTTILDEEPIVNSGLAAALALCKNKGLLDTQMQKISRVRAPTGALPNDNYSIEDKMT
IDDKYSRREEYRGFTQDFKEKDAYKPDVKIEYVDESGRKLTPKEAFRQLSHRFHGKGSGK
MKTERRMKKLEEEALLKKMSSSDTPLGTVALLQEKQKSQKTPYIVLSGSGKSMNANNITK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgggttcgtcgaaaaaacacaaggaaaagggccgtgataaagataaggatgccgaagaa
cgtggtcaccgcgaacacaaaaaacaccgtcataaggaccgggagagggacaaggaacga
gatagcaaccgagagcgggagaaaaggaaacggtccagatcgaaggaaaggagtggacgg
ggttccgagagagacggtcgcagtaaaggggagaggagtactggggagcctcgcgtaaag
aaagaaaaagtggagcccggatgtgagggcacagaaattgcaccacagtctgcaagtgga
gatgcctcgcttaccattgaagagacaaacaagctgagggccaagcttggtctgaagcct
ctggaaatgactgacaccactaaagagctcggcacgaaggagcagccaattgttgcagag
acgatcaacccagtgtacattaaacagcagaaagagatgcgggagaaactggcagctctg
aaggaaaagaggctcctcaataagaaactggggaaagtgaagaccttagcagaagaagac
tggctggatgacactgttgcctgggttgagaggagccggaagatggccaaagagaaagaa
ctggcagagaagagagccaagcttctacaggagatggatgaggagtttggtgtgagcaat
ctggtggaggaggagtttggacagaccaacaaggccgcttacagctctcgggacctaaag
ggtctcactgtgcagcacaagatggagtcatttaatgaaggggagactgtcattcttaca
ctgcaagacaaaggtgtgcttgatgaagaggggggcgatgttcttgtaaatgtgggtctg
gtggacaaagaaaatgctgagaagaatgtggagttgaagaagaaaaagcctgattacaaa
gcctatgaagaggacgagagtgtggatgacatggttacgttcaagccgcgcactgtgctg
ggcaagtatgatgaggagattgatggagagaagaagaagagtttccggctgagcaaaggg
ggctgtgctgagggggaacgggaacgggagctcctggccatcagggagaccctgaggaac
caggcccagtccctggagatgcctgctctcgctattgcctcagagtactacacaccccag
gagatggtgggctttaagaagaccaagcagcgcgtcaggaagatcaggaagaaggagaag
gcattgcctgatgagctccaattagacgacacacgcaacaccgactttggctccagggct
cggggtcggggtcgcaagcagttggatgaggagggccaggaaggggtgaaggagcgtgtt
atcataccgggactagatgtaccccaacagtcagatgacatcaggatggcggacatggac
atcagtgacgatgagaacttcaccccccctgatccggctgtgctggaggaggacgaggca
gagcaggagctgcaaaagcagctggagaaacagcgaaaactcaaacagaaacaactgctc
aaaaactctggggaaaaggtggcagagcaggtccgagggcttgcaagaggggacgacagt
gacgatgaagaagacaagaacaacctgaacattgtgttcaacgccacctctgagttctgc
agaactctgggtgacatccccacctacggcctgtcgggaaaccgagaggaccaggaggac
atcatggatttcgagcaggaggcggagagagacggcgctggcggttcagactccgatggg
gatgagaatgttggctggagcatcgtcaatgtggatgaggagcagaagcagcctgatttc
gccacagcctcgaccaccatcctggatgaagaacccattgtcaactctgggctggctgct
gccttggcgctctgcaagaataagggtctcttggacactcaaatgcagaagatatcccgt
gtccgtgcacctaccggtgccctgcccaatgataactacagcattgaggacaagatgact
atagatgacaagtacagtcggagggaggaatatagaggcttcacccaggacttcaaggag
aaggacgcctacaagccagacgtcaagattgagtatgtggatgaatctggacggaagctc
actcccaaagaggctttccggcagctctcacatcggttccatgggaaggggtctggcaag
atgaagactgagaggaggatgaaaaagctggaagaggaagcgctgctgaagaagatgagc
agtagtgatacccctctaggaactgtcgctttgcttcaggagaaacagaagtcacagaaa
accccctacattgttctgagtgggagtgggaagagcatgaatgcaaacaacatcaccaaa
tag

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