Salvelinus sp. IW2-2015 (Arctic char): 111964253
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Entry
111964253 CDS
T05762
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
salp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111964253 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
111964253 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111964253 (sympk)
03019 Messenger RNA biogenesis [BR:
salp03019
]
111964253 (sympk)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111964253 (sympk)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111964253 (sympk)
U7-dependent histone pre-mRNA processing factors
111964253 (sympk)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
HEAT_MROH2B_C
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
111964253
NCBI-ProteinID:
XP_023843837
LinkDB
All DBs
Position
LG5:complement(29888711..29901589)
Genome browser
AA seq
1267 aa
AA seq
DB search
MNNKGSNKKMASNNGESAGVRTSVASQFFNEDEDTAIVDMTTSEKVVDLLNQAALIATDS
KLTVLKQVQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKL
IANLNMLLKDDSVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEEVLA
MLEVDNDGVRTHAIKFTESLIITLSPRTSDSDTPKRQEGDISLDKISKDHAYIRYDTLCG
EGKSALEQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLA
KSQVSSVRKNLKLHLMAVLKHPCSLEFQGQISTLLLDLGMSQNEITRNTPAPREPRKRPR
HEPYTEGKKLKIEPALIEDDEDKEEPAPPSISKPSSVPVAQSAIDLTAEFLRPLLSPENV
ANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARMMATQMTAAGVGPGLEQCKA
RDEKAGKEEGMDEGIGESSKDLLIKRKVPVMGQAISVVGGGYGDKSQTETGEAPQVKRLP
EPILPSTQIKTPGASGKRKVFRLADVIQPLTDTQLEKLTNMAVKRILHSEKAIAQSGMXH
VRVKLLSRLVTQFEGMMKDDVLEFILEDIRTRSDLAFSLLYQEYNTYLSHQPTGLLDSYD
HCLFTLLSGLQEKPEQRDGLFTKIVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELI
IKRPSRQFQYLHVLLDLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHP
NPPSLLFGADKDTEVASPWTEDTVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRVIEQPIRGMGMKSPQLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPG
ELLISLHNVDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVI
QSLSMYPRLGGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMREPLLQHVHSFTPHQQAHIPASIMTVLEANSKQPEPEAMQPVVLERQVETPV
ATIAPNVTFAPVATFAPVATPPVRAEPIPVPLRDPEPAVQQHLPNKKEEEEPMEEGETAP
ASQEETADTTLQVDLPVVEENPTPDPIETVEDPMEEAPTEPSDVTDQLKDVTEDSTAEPE
TGTGDAE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaggatctaataagaagatggcctcaaataacggagaaagtgctggtgtg
aggaccagtgtggcatcacagtttttcaatgaagacgaggacacggctattgtcgatatg
accaccagtgaaaaggttgttgatctcctgaaccaagcagctcttattgctacagacagc
aaactcacygttctcaaacaggtccaggaactgatcatcaacaaggacccctctttactt
gacaatttcttagatgagatcatagcctttcagacagataagtcaatggaagtaagaaag
tttgtcattggcttcattgaggaagcatgtaagagggacaacgagctcctgcttaaactg
attgccaacctgaacatgctgctgaaggacgacagtgtcaatgtggtgaagaaggctatc
ctcacactcactcagctctacaaagtggcgctgcagtggtttgtgcgttccaagaccatg
tcagacatgcaggaagcatgctgggacatggtgactcagatgaaggaggaagttctggct
atgctggaagttgacaatgatggagtccgcactcatgctatcaagttcacagagtctctc
atcatcactctttcaccgaggacgtcagactctgacactcccaagcgccaagagggagac
atcagcctggataaaatctccaaagaccatgcctatatccgctacgataccctgtgtggg
gagggcaagtctgcgctggagcagcttctgaagttcatggtccaccctgctatctccagc
atcaacctgaccacagccctgggttccctggccacactggcccgacagaggcctatgttt
atgtctgaagtggtccaggcttatgagactctgcatgccaacctacccccaacgctggcc
aagtctcaggtgagcagtgtacgcaagaatctgaagttacacctgatggcagtgctcaag
cacccctgcagcctggagttccagggccaaatcagcactctgctcctagacctggggatg
tcccagaatgaaataacccgcaacacgccagccccacgtgaaccgcgcaaaaggccccgc
catgagccatacacagagggcaaaaagctcaagattgagcccgctcttatagaagatgat
gaagataaagaagagccagcccccccttccatctccaagccctcctctgtgccagtagcc
cagtcagccatcgacctcactgcagagttcttgcgccccctgctctccccagagaacgtg
gccaatctggttctaatcagcatggtgtacttgcctgatgtcatgccagcatccttccag
gccacatacacaccagtggagtctgcaggaacagatgcccaaatcaaacacttggccaga
atgatggccactcagatgacagcagctggagttggaccaggactggagcagtgcaaagca
cgagatgagaaagctggaaaggaggagggcatggatgaaggcataggggagtcctccaaa
gacctgctcatcaagcgtaaagtaccagttatgggccaagccatctctgtggttggagga
ggctatggagataagagccaaactgaaacgggggaagccccccaggtcaagaggctgcct
gagcccatcctcccctccacacagatcaaaacacctggtgcaagtgggaagaggaaagtg
ttcagattagctgatgtgatccagcctttgacagacacccagcttgaaaagttgaccaac
atggctgtcaagcgcatcctgcactcagaaaaagctatagcacagagtgggatggsccat
gtgcgcgtgaagctgctgtccagacttgtgactcagtttgaggggatgatgaaggatgat
gtgctggagttcattctggaggacattaggaccaggagcgacctggccttctctcttctc
taccaggagtacaacacatacctcagtcaycagcccactggcttgttggacagctacgac
cactgcctcttcactctactgtccggcctgcaggaaaagcckgagcagagggatgggctt
ttcacaaagattgtgctggaggctccgttaattacagaatctgctttggaagtaatacga
cggtactgtgaagatgagtcgcgggtgtacctcggcatgactactctaaaagagctgatt
ataaaacgtccctcaaggcagttccagtacctccacgtgcttctggatctcagctcacat
gaaaaggagaaggtgcgctccaatgccctgtccttcataaagcggatgtatgagaaagac
cagctgagggactatattgagaagtttgcactgaactacatgcagcttctcgtacaccct
aatcctccgtcgttactttttggggctgacaaggatacagaggtggcctccccctggaca
gaggacacagtgaggcagtgtctgtacctctacctgtcccttctgcctctcaaccaccgc
ctggttcatgagctggcctctgtctacactgaagccattgctgacatcaagcgcagtgtg
cttcgagtgatagagcagccaatccgtggaatgggaatgaagtctccacagcttctgctg
ttggttgaaaactgtcctaaaggagcagagactctggtcactcgctgcctgcacattctc
actgataaagtgcctccgtcaccagagttggtggagagagtgagggacctgtatcacaaa
cgagtgcccgacgttcgtttcctaattcctgtcatcaacggcctggaaaagaaagaggtg
acccaggctcttcctaagcttatcaagctcaaccccattgtggtgaaggaagtcttcaac
cgtctcctgggcacccagcatagcgagggtagttcctcaatgtctcctctcacccctggc
gagcttctaatttctttacacaatgttgactcaacaaagtgtgacatgaagtccatcata
aaagccaccaacctgtgttttggggagaagaatgtgtacacgtcagaggtcctggctgtg
gtaatgcagcagctgatggagcagagtcctctccccattctgctgatgagaacagttatc
cagtccctcagcatgtacccccgcctgggaggcttcgttatgaacatcctgtcccgactc
attgtcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaagccgcagtcctacagcgtgctgttgcagctcccaccagctcaacttaccagt
gtgtttgagcgctgcccggagatgagggaacctcttctacagcatgtccactctttcacc
ccccaccagcaagcccacattcccgcctccatcatgacagtcctggaggccaacagcaag
cagccagaaccagaggccatgcagcctgtagtattggagagacaggttgagacacctgtt
gcaaccatcgcacccaatgtaaccttcgcacctgttgcaaccttcgcacctgttgcaacc
cctccagtacgggcagaacctattccagtaccactgagagatccagagccagcagtccag
cagcatctgccaaataaaaaagaagaagaggaacccatggaggaaggagagacggccccc
gctagtcaagaggaaactgcagacaccactttgcaggtggatttgccagtagtggaagaa
aaccccactccggatcctatagagacagtggaggacccaatggaggaggcacctactgaa
ccttcagatgtcactgaccaattaaaagatgtcaccgaagacagtaccgcagaacctgag
actggcacaggagatgcagaatga
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integrated database retrieval system
