Salvelinus sp. IW2-2015 (Arctic char): 111964455
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Entry
111964455 CDS
T05762
Name
(RefSeq) high mobility group-T protein isoform X1
KO
K10802
high mobility group protein B1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03410
Base excision repair
salp04140
Autophagy - animal
salp04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
111964455
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111964455
09143 Cell growth and death
04217 Necroptosis
111964455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111964455
03400 DNA repair and recombination proteins [BR:
salp03400
]
111964455
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111964455
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
111964455
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
111964455
MMR (mismatch excision repair)
Other MMR factors
111964455
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
111964455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HTH_Tnp_Tc3_2
HTH_32
HMG_box_5
NOA36
Sigma70_r4
HTH_28
Motif
Other DBs
NCBI-GeneID:
111964455
NCBI-ProteinID:
XP_023844122
LinkDB
All DBs
Position
LG5:36689947..36696096
Genome browser
AA seq
348 aa
AA seq
DB search
MRRKELSEEFRDKVVDRHRLGEGYKKISHTLSIPLGTVRSIIKKWKVYGTTETLPRSGRP
SKISSWAKRILALELTMRPTASLKELQSSMAEMGENVHESTIARSFANCSRYGRSERRRT
LQKTNSDLQSRAEFAEKHLDIEMGKDPRKPRGKMSSYAYFVQTCRGEHKKKHPEASVNFS
EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPS
SAFFIFCADFRPQVKVETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDI
TAYRNKGKLPVSMPAKAAAPAKDDNDDDDDDDDDEDDDGEDDDDEDDE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaaagagctttcagaagagttcagggataaagttgtagatcggcacagatta
ggggaaggttataagaaaatttcccatacattgagtatcccattgggtacagtcaggtca
atcattaagaagtggaaggtgtatggaaccactgagactctgcccagatcaggacggcct
tccaaaataagcagttgggcgaaaaggattctagctctagaactcaccatgaggccaact
gcctctttgaaagagctgcagagttccatggctgagatgggagaaaatgtccacgaatca
actatagctcgatcattcgccaactgtagccggtatggccgatcggaaagaaggagaaca
ttacagaaaacaaacagcgatctccaatcacgtgcagagtttgcagaaaagcatttagat
attgagatggggaaagatccaaggaagccgaggggcaagatgtcctcctatgcctacttt
gtccagacctgtcgaggggagcacaagaagaaacacccggaagcttccgtcaacttctca
gagttctccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaag
tttgaggatctggccaaactggacaaggtgcgatatgagagggagatgaggagctacatt
cctcccaagggagagaagaagaaaaggtttaaggaccccaacgcccccaagagaccatcg
tctgcgttcttcattttctgcgctgacttcagaccccaggtgaaggtggagaccccgggc
ctgtctatcggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcggag
gacaaggtgccctatgagaaaaaggctgccaagctgaaggagaagtacgagaaggacatc
actgcgtaccgcaacaagggtaagttgccggtcagcatgccagcgaaggccgccgcaccc
gccaaggacgacaacgatgacgacgatgatgacgacgatgatgaggatgacgatggtgag
gatgacgatgatgaggatgacgagtag
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integrated database retrieval system
