Salvelinus sp. IW2-2015 (Arctic char): 111964613
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Entry
111964613 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: activating signal cointegrator 1 complex subunit 3-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111964613
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111964613
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
111964613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
111964613
NCBI-ProteinID:
XP_023844227
LinkDB
All DBs
Position
LG6.1:complement(4072071..4223839)
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AA seq
1812 aa
AA seq
DB search
MSPPRLTGALRSFSTVSKQEDFTEEVYDLKTKRLKRQELFSREGLTWQKIVQFFTQHLEK
AEQQAAAQELKSILQAAKQIVGTEHGQDTIESAAVFLFETFHNKDHVGHEETRAIKQMFG
PFPSSAADASCAAVSRAVAPLGESQVEEFVRSQSSCRAPQRGSAFGRNITFSYDCYTLDP
QEALPWAGDPEDETPGGGLDFHSFLNNHQGRRGNGGEADGGRLSPGGAQSPGDGTILRGE
VEKFLNGGNMISSSPEELCTSLFEMLASTKSDDELQNELFELLGPEGFEILISFSSREVF
HRGFSLSIPADRINYPPDGSRKGSGGEGSSKPTYGCQVTIQSGKEKEMMKMHRREEKRER
KRGERRWDDTESSSDLYFDPKEMRAQREQALLTARRSPVLSRERVYERIRYPNVYDCYAE
ATKTSAFVGGAKLMLPEGIKRENNKMYEEVEIPPSDPMPIGFEEKPIYISELDEIGQLVF
KGMQRLNRIQSIVFETAYKTNENLLICATTGAGKTNIAMLTVLHEIRQHLQPGGVIKKDE
FKIVYVAPMKALAAEMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDV
VTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESLVARTLRQVSTSLSQHKLTCVCIL
CVFQVMVFVHARNATVRTSMGLIEMAKNRGESSFFQPDHGPDYGQCEKSIQRSRNKQMKE
MFPDGFGIHHAGMLRADRSLMESMFSRGYLKVLCCTATLAWGVNLPAHAVIIKGTQIYDA
KRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITAHDKLSHYLTLLTQQNPIESQFLET
MADNLNAEVSLGTVTNVEEAVRWLSYTYLYIRMRANPLAYGINHKAYQMDPGLELYRKEL
VVMAARKLDKARMIRFEERTGYFASTDLGRTASHFYIKYNTMETFNELFNSQKTEADILS
IVSKAEEFEQVKVRDEEMEELEQMLCNYCELPAAGGVENGYXKSNILLQTYIGRGEVDSF
SLISDLSYVAQNAARIVRALFEIALRKRWPAMTYRLLNLCKVIDKRLWGFAHPLRQFSIL
PHNVLARLEEKKLTVDKLKDMQKDEIGHMLHHVNIGLKVKQCVHQIPSILMEATIQPITR
TVLRVRLQITPDFQWHDQCHGSVGEPWWLWVEDPINNHIYHSEYLLLQKKQVVSGEPQQV
VFTIPIFEPMPSQYYIRAVSDRWLGSEAVCIINFQHLILPERHPPHTELLDLQPLPITAL
GNPEYEILFKFTHFNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAELAMFRVFIQYPTS
KVCGAPLKALVRERIEDWKIRIEEKLGKKVVELTGDVTPDMRAIAAADLIVTTPEKWDGV
SRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTNKTVRVVGLSTALA
NARDLADWLGIGQVSGLFNFRPSVRPVPLEVHIHGFPGQHYCPRMASMNKPVFQAIRSHS
PAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQDETQMTDIIATVRESNLKLTXA
FGIGMHHAGLHERDRKTVEELFVNCKIPGRTLIGPGGPEGQLFHFDCGYCSCVVVSPDVL
QMMGRAGRPQYDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAAGTI
TSKQDAMDYITWTYFFRRLVMNPSYYSLDDISHETINKYLSNLVERSLRDLMKRRELLAV
KRIGYCRHRSTVSLAFYTPEKTGKCIYTLYLMSDSYLGLDQQYDLHLNVTPACIAAQVNS
EVTEAMGGMSVK
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaccccggctcaccggcgccctgcgctccttctctactgtcagcaagcaggaa
gacttcactgaagaagtatatgatctgaagaccaagcgtctgaagaggcaggagctgttc
tccagagagggcctgacatggcagaagatagtccagttcttcactcagcacctggagaag
gcagagcagcaggctgcagcacaggagctgaagagcatcctacaggctgccaagcagata
gtggggacagagcatggccaggacaccattgagagtgctgctgtcttcctatttgagacg
ttccacaacaaggaccatgtgggtcacgaggagacgagggccatcaagcagatgtttggg
cccttcccctcctcggcagccgacgcctcctgtgctgctgtgtcccgggctgtggcccct
ctgggagagtcccaggtggaggagtttgttcgttcccagagctcctgtcgcgcccctcag
cgcggctcggccttcggacgcaacatcaccttctcctatgactgctacaccctggacccc
caggaggccctgccctgggcgggggaccctgaagacgagacccctggtggaggcctggac
ttccacagcttcctcaacaaccaccaaggtcgcaggggtaatgggggagaggcggatgga
ggcaggctaagcccgggaggggctcagagccctggggatgggaccatcctgaggggggag
gtggagaagttcctgaacggaggcaacatgatctcctccagccctgaggaactgtgcacc
tccctgtttgagatgctggcctccaccaagagtgacgacgagctgcagaatgagctgttt
gagctgctgggcccagagggatttgagatattgatctcgttctcctccagagaagtcttc
catcgtggattctccctctccatccctgcagacaggatcaactacccaccagatggtagc
cgtaaaggaagtggaggagaggggagcagcaagcccacgtacggctgtcaggtgaccatc
cagtcagggaaggagaaagagatgatgaagatgcaccggagggaggagaagagggagagg
aagaggggggagagacgttgggatgacacagaatcctcttccgacctctactttgacccc
aaggagatgagagctcagagagagcaggccctgctgacagcacggcggtctccagtgctg
agcagagagagggtgtacgaacgcatccgctaccccaacgtctatgactgctacgccgag
gccaccaagacctccgccttcgtagggggagccaagctgatgttaccagaggggataaag
agagagaataataagatgtatgaagaggtggagattcctcctagtgatcccatgcccatc
ggctttgaggagaaacccatctacatctctgaactggacgagattggtcagttggtgttt
aaggggatgcagcgtctgaacaggatccagtccatagtgtttgagacagcctacaaaacc
aatgagaacctgctcatctgtgccaccactggggccggcaagaccaacatcgccatgctg
acagtcctccatgagatcagacagcacctccaacctggaggggtcatcaagaaggatgag
ttcaagatagtgtatgtagctcctatgaaggccctggcagcagagatgactaactacttc
agtaagcggttggagccactgggcattgctgtcaaagagctcactggagacatgcagcta
accaaaggggagatcctgcgtacacagatgctggtgaccacccctgagaagtgggacgtg
gtgaccaggaagagcgttggggacgtggccctgtcccagattgtaaagctcctcattctg
gacgaggtgcatctgctacacgaggacagaggaccagttctggagagcctggtggccagg
acactacgacaggttagtacctctctgtctcagcataaactgacctgtgtctgtattctc
tgcgtcttccaggtgatggtgtttgtccatgctcgtaatgccacggtgaggacatccatg
gggctgatcgagatggctaagaaccgtggagagtcttccttcttccagccagaccatgga
ccggactacggccagtgtgagaaatcaatccagcgttccaggaacaagcagatgaaggag
atgttcccagatggttttgggatccaccacgctgggatgctgcgtgctgaccggagcctg
atggagagcatgttctccaggggttacctcaaggttctgtgctgtactgccacactggcc
tggggagtcaacctgcctgcacacgctgtcatcatcaagggcacccaaatctacgatgct
aagcgtggtaccctggtggacctgggcatcctggatgtgatgcagatcttcgggcgtgcc
gggcggccccagttcgacaagtacggcgagggcaccatcatcacggcacatgacaagctg
agccactacctcaccctgctcacccagcagaaccccatagagagccagttcctagagacc
atggctgacaacctcaacgctgaggtatcactagggactgtgactaacgtggaggaagca
gtgaggtggctgagttacacctacctgtacatccgcatgagagccaaccctctggcctac
gggatcaaccacaaggcctaccagatggacccaggtctggagctgtatcgtaaggaactg
gtggtgatggcagccaggaagctggacaaggccaggatgatccgcttcgaggagaggaca
ggatacttcgcctccactgacctgggcagaaccgccagtcacttctacatcaaatacaac
accatggagacgttcaacgagctgttcaactcccagaagacagaggctgacatcctcagc
atcgtctccaaggccgaggagtttgaacaggtcaaggtgcgtgatgaggagatggaggaa
ctagagcagatgctgtgtaactactgtgagctgcctgctgcaggcggagtggagaacgga
tacngcaagtcaaacatcctactgcagacctacatcggccggggagaggtggacagcttc
tccctcatctcagatctgtcctacgtagcacagaacgcagctcgtatcgtcagggctctg
tttgagattgctctgaggaagcgctggcctgccatgacctaccgcctgctcaacctgtgt
aaagtgatagacaagcgtctgtggggcttcgctcaccccctgagacagttctccatcctg
cctcacaacgtgctggcccgtctggaggagaagaaactcactgtggacaaactgaaagat
atgcagaaggacgagataggtcacatgctccaccacgtgaacatcgggttgaaggtgaag
cagtgtgtccaccagatcccttccatactgatggaggccaccatccaaccaatcacacgc
accgtgctcagggtccgcctccagatcacccccgacttccagtggcacgaccagtgtcat
ggttcagtgggtgagccctggtggctgtgggtggaggaccccatcaacaatcacatctac
cattcagagtacctgctcctacagaagaaacaggtggtgagtggggagccccaacaggtg
gtgttcaccatccctatctttgagcccatgccttcccagtactacatcagagctgtgtca
gaccgctggctgggctcagaggctgtctgcattatcaacttccaacacctcatcctgcct
gagagacatcccccacatactgagctgctggacctgcagccgttacccatcaccgccctg
gggaacccggagtacgagattctgttcaagttcacccacttcaatcccatccagacacag
atcttccacacgctctaccacaccgacaccaacgtcctgctgggggcgccaacgggctcc
ggtaaaaccatcgcagcmgagttggccatgttccgagtcttcatccaataccctacctcc
aaggtctgtggtgcccctctgaaagctctggtcagggagaggattgaggactggaagatc
aggatagargaaaagctggggaagaaggtcgtggagctgacaggtgatgtgactccagac
atgcgggccatcgctgcggccgacctgatcgtgaccacgccggagaagtgggacggcgtg
agtcgctcctggcagaaccgcagctacgtccagaaagtagccatcctcatcatcgatgag
atccacctgctaggggaggacagaggtcctgtgctggaggtcatagtgtccaggaccaac
ttcatctcctcccacaccaacaagactgtccgcgtggtgggcctgtccacggccctggcc
aacgcacgagacctcgccgactggctagggattggacaggtgagtggtttgtttaacttc
cggccctctgtgcgtcccgtcccattggaggttcacatccacggcttcccaggacagcac
tactgcccccgcatggccagcatgaacaagcctgtgttccaagcgattcgcagtcactct
ccagccaagcctgttctgatctttgtgtcgtcgcggcgacagactcgtctgacagctcta
gacctgatagccttcctggccaccgaggacgaccccaaacagtggctgcaccaggacgag
actcagatgacagacatcatcgccacggtgagggagtccaacctgaagctgactntggcg
tttggtatcggcatgcaccacgctggactacacgagagagacaggaagactgtggaggaa
ctgtttgtcaactgcaagattccaggtaggaccctgataggtccaggtggacctgaaggt
cagttgttccattttgactgtggttactgtagttgtgttgtggtctctccagacgtgctg
cagatgatgggccgtgcaggccgccctcagtatgacgaccagggcaaagctgtgatcctg
gttcacgacatcaagaaagacttctacaagaagttcctctacgaacccttccctgttgag
tccagtctcctgggtgtgctgtcagaccatctgaatgctgagatcgctgcagggaccatc
acctctaaacaggatgctatggactatatcacctggacgtatttcttccgcaggctggtc
atgaaccccagttactacagcctggatgacatcagccacgagaccatcaacaagtacctg
tccaacctggtggaaaggagtctccgagacctaatgaagcgcagagagctactggccgtc
aaacgcatcggatactgccgacaccgcagcaccgtttccctggccttctacacccccgag
aagaccggaaagtgtatctacacgctatacttgatgagtgacagttacctgggtctggac
cagcagtatgacctccacctcaatgtgacccctgcctgcatcgctgcccaggtcaacagt
gaagtcactgaggccatgggaggcatgtccgtcaagtga
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integrated database retrieval system
