Salvelinus sp. IW2-2015 (Arctic char): 111964929
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Entry
111964929 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain-containing protein 1
KO
K16682
LIM domain-containing protein
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111964929
03036 Chromosome and associated proteins [BR:
salp03036
]
111964929
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111964929
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Sister chromatid separation proteins
Aurora kinases
Regulators of Aurora kinases
111964929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
111964929
NCBI-ProteinID:
XP_023844571
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All DBs
Position
LG6.1:complement(5840153..5888150)
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AA seq
680 aa
AA seq
DB search
MDKYDDLDLEASKFLEDLNMYEASRDGLFRMKRDARNNSDFEETRRVFASKMTKIHIQKQ
QEEIAKNNLXVRMNGGQNRAADSTFYTKDRPPINSYRQAGEAAAKPPILSGPLPGTASGA
SQYAPNDALKHHSPSQQSYGYGNNYDNKERFEPHSYHHALSPISPGNAHTPASGHPASPS
GTSASYSSRGGQASSGSSSPGGSSGLMFSPSQQPPHHSPYPSFSDSLQSPSPTRLHQSKA
ATLLVXQRPPTVADAGAAADWMRSLGNPELIAPLPLSAFTGGADLYQQLSPQLAPVTPPT
GPYSAASSMSPRSTANHGNLGQNGLSQSPVALTPSPTPAQVAVPPVPPSETAQPKATTGA
YFPASASPSGTSVSRSFGQGQGXGQAQGRQVAMGVDVPSGLDSQLSSGGEACQLQSQPQS
EAPSTPRALKLPSQTLHVQPEQGPSAAEIKLEALTKRLEKEMDAQPKADYFGSCVKCNKA
GYXSHXAVPGYGSLYHDVCFTCSACSRRLRGKAFYYVGGKVFCEEDFLYSGFQQSADKCN
ACGHLIMDMILQALGKSYHPGCFRCVICNDSLDGVPFTVDTENKIYCVKDYHRVLAPKCA
ACNQPILPSEGSDETIRVVSMDKDYHVECYHCEDCQMELNDEEVHRCYPLDGHLLCHACH
LKHIEPGCASPTAASYQHQF
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggataaatacgacgatttggatcttgaggcaagtaagtttttagaagacctcaatatg
tatgaggcatctagggacgggttgttccgaatgaagagggatgcacggaacaactccgac
tttgaagaaaccaggagrgtttttgcctccaaaatgacaaaaatccacatacagaaacag
caagaggaaattgccaaaaacaatttggyagtgagaatgaacgggggtcaaaacagagcg
gcagacagcacgttttacaccaaagacaggccgcctatcaatagctacagacaggcagga
gaagctgcagccaagcctcccatactctctggccctttgccaggcaccgccagtggcgcg
agtcagtacgcgcccaatgacgctctgaaacaccattcacccagtcaacagtcatacggc
tacggaaacaattacgataacaaggagcgttttgagccgcattcttaccaccacgccttg
agtcccatcagccctgggaacgcacacacacctgcttctggtcaccctgccagtccctcg
ggcacttcggcctcctactcctccaggggtggccaggcctcctcaggatcctccagccct
ggtggatcatcaggccttatgtttagcccatctcagcagcccccacaccactcaccatat
ccctccttctccgacagcctacagtctccgagccccactagactgcaccagagcaaggct
gccactctactagtgcrgcagagaccccccacggtggctgatgctggggctgcagcagac
tggatgcggagcttggggaacccagagctgattgcaccgctccctctgagtgccttcact
ggtggagctgacctgtaccagcagctgtctccccaacttgcccctgttacaccgccaaca
ggcccttactcagcagcatcctctatgagcccaagatcaacagccaaccatggaaatcta
ggccagaacgggctctctcagagtcctgtggctctcacccccagccccacccctgctcaa
gtggctgtcccacctgtacccccatctgagacagcccagcccaaagccaccactggagct
tacttccctgcctctgcctctccctctggaaccagtgtctctagaagctttggccagggt
caaggtrtaggccaggcgcagggcaggcaagtggccatgggggtggatgtgccctctggc
ctagacagccagctgtcctctggtggtgaggcatgccaactccaatcccaaccccagtct
gaagcccccagcacccccagagctctcaaactgcccagccagactctccatgttcagccg
gagcaggggccgtctgccgccgagatcaaattagaagccctgaccaagcgtctggagaag
gagatggacgcccagccaaaggcagactacttcgggagctgtgtgaagtgtaacaaggca
gggtacnngagccactgagccgtgccaggctatgggagcctctatcatgatgtctgcttc
acctgcagcgcctgcagcagaaggctacgggggaaagcattttactacgtcggtgggaag
gtgttctgtgaagaggactttctgtattctggattccagcagtctgcagacaagtgtaac
gcatgcggacatctgatcatggatatgatcctgcaggcccttgggaagtcctaccaccct
ggctgtttccgttgtgtcatctgtaacgacagtctggacggagtgcccttcactgtggac
acagagaacaagatttactgtgtcaaagactaccacagggtcttggcccccaaatgtgca
gcatgtaaccagcccattctgccttcagagggctctgatgaaaccatccgagtggtatcc
atggataaagactaccacgtggagtgctatcactgtgaagactgtcagatggagctgaac
gacgaggaggtgcaccgctgctacccgctggacggccacctcctctgccacgcctgccac
ctgaagcacatcgagccgggttgcgcctcgcccaccgctgcctcctaccagcaccagttc
tag
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