Salvelinus sp. IW2-2015 (Arctic char): 111965642
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Entry
111965642 CDS
T05762
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111965642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111965642
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111965642
U7-dependent histone pre-mRNA processing factors
111965642
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
111965642
NCBI-ProteinID:
XP_023845575
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Position
LG6.2:1408629..1434563
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AA seq
567 aa
AA seq
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MVLHFKVLHFLLLHLSFPKMANLAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKD
IFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS
EKNKEELKSLGTGAPIIESPYGDNIIPDEAPESISRAVASLPPEQMFELMKQMKLCVQNS
PQEARNMLLQNPQLAFALLQAQVVMRIVDPEIALKMLHRQIPVQPLVPNSQAGPVPVANQ
PIPPPNAPVSQSQPMPGMHMNGAPQMMQPPPIGGGPGPMPGQGLVGPPGGIQPPIGMPQG
GPVPIDRGQGNLQHSPVGSSGQAAIERPQGPGGIPPRGLLGDGPNDPRGGTLLSVTGEVI
EPSRGGGFIGAPPPHQGPPIHMNQMVGGPPPDMRPPHDMRGPPMGEPRGMMGEPRGPPMG
EPRXMMGEPRGPPMGEPRGMMGEPRGPPMMEPRGPPMETRGRDPRAVDTRGPVSGQRVPM
AQGMQGPPPHSMNPNAPTTARPGPGVPQSGGSFSPGQSQVTSQDHEKAALIMQVLQLTPE
QIAMLPPEQRQSILILKEQIQKTAGAP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggtgttacactttaaagttttgcatttcctgttgttacatttgtcattccctaaaatg
gcgaatttagcagctgctgttgttgctgccgctggtagagatcctgctgttgaccgttca
ttgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactgaaagac
attttttcagaagtcgggcttgttgtcagctttaggttagtgtatgatagggagacaggc
aagccaaaaggatatggcttctgtgagtatcaagaccaggagacggccctcagtgccatg
cggaacctgaacggaagagagttcagcggccgagctctccgtgtcgacaatgctgctagt
gagaagaataaagaagagctcaagagtttggggacgggggcccctatcattgaatctccc
tacggggacaacataataccagatgaggctccagagtctataagcagagctgtggccagt
ctgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaaaatagt
ccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgccttgctccag
gcccaggtggtcatgaggatcgtagaccctgagatcgccttgaaaatgcttcaccgtcaa
atcccagtgcagccattggttcccaacagtcaagctggaccagtgccagtggccaaccag
cctattccaccgcccaatgctccagtctcccagtcacagccaatgccgggcatgcacatg
aacggagccccccagatgatgcagccscctcccataggtggaggacctgggcccatgcca
gggcagggactggtgggaccaccaggtgggatacagccaccgataggaatgcctcaggga
ggtcccgttcctatcgataggggacaaggaaacctccagcactctcccgtaggatcgtct
gggcaagctgctatcgagcggcctcaaggaccaggtggtatcccccccagaggcctgctt
ggcgacggccccaacgacccccgaggaggaaccctgctctcagtcacaggagaggtcatc
gaacccagtcgtggaggaggcttcattggcgcccccccaccacaccaggggccccccata
cacatgaaccagatggttggcgggcctcctccggacatgaggccgcctcacgacatgaga
ggaccccccatgggtgaacccagaggcatgatgggagagccccggggaccccccatgggt
gaacccagargcatgatgggagagccccggggaccacccatgggtgaacccagaggcatg
atgggagagccccggggaccccccatgatggagcccaggggaccccccatggagacgaga
ggtcgtgaccccagagcggtggacacccgtggaccagtgtcaggccagagggttcccatg
gcccaaggaatgcagggcccccccccccactccatgaatcctaatgcccctacaactgcc
agaccgggtcctggtgtaccacagtccggaggtagcttcagcccagggcaaagccaggtg
acctcacaggaccatgagaaggccgccttgatcatgcaggtactgcagctgaccccagaa
cagattgctatgctgcccccagagcagaggcagagcatcctcatcctcaaagagcagatc
cagaagaccgccggggcgccctaa
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