Salvelinus sp. IW2-2015 (Arctic char): 111965753
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Entry
111965753 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111965753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111965753
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
111965753
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111965753
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
AAA_16
ATP_bind_1
AAA_22
MMR_HSR1
AAA_18
CbiA
Motif
Other DBs
NCBI-GeneID:
111965753
NCBI-ProteinID:
XP_023845795
LinkDB
All DBs
Position
LG6.2:complement(7368555..7373810)
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AA seq
444 aa
AA seq
DB search
MYAMVTEGPEKTGEEGVVAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNVHTALEQMRRQAER
DNERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIE
RPADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEXNRKASVGGCIIN
XCGWVKGSGYQALVHCASAFXVDVVLVLDQERLYNELKRDLPHFVRVVLVTKSGGVVERS
KDCRRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTHHVLSVSCADEGEEGAGGVRRGVLESPVCGFIVVTNVDTQAQVMTV
LSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaatggtgactgagggcccagagaagactggtgaggagggagtggtggctggt
ggcggggggacgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggcc
ggggagaaggtgcaactggagctgctcacaggattggcggaggtctttggctctgagctc
aaccgcaacaagaagtacacgtttggaccaggttccaagattgctgtgttcacctggcag
ggctgtagtgtttctctctcggggaagacagaggtggcgtacatatcaaaggacacaccc
atgctgctctacctgaacgtacacactgcactggaacagatgagacgacaggcggagaga
gacaacgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcaacg
gtgtgcaggctgttgctgaactacgctgtcaggctgggcaggaggcccacactggtggag
ctggatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgag
cgtccggctgacgtggaggaggggtactccgtacaggctccgctggtctaccactttggt
tccaccactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaa
gtgttctcccagcgctgtgagngaaacaggaaggccagtgtgggcggctgcatcatcaac
nactgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttc
naggtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggac
ctaccgcacttcgtccgagttgtgcttgttaccaaatccggaggggtcgtggagcgctcc
aaagactgccggcgtgaatctcgggacgagaagatccgggagtacttctacggttttcgc
agtgccttgttcttccctcacgctttcgacgtgcgcttttctgatgtgcgcatctacaaa
atcggagcgccttccatcccggactcatgcctgccgcttggcatgtcgcaggacgacacc
cagctgaagctagtccctgtgacgcccggtcgtgacctcacacaccacgtgctgagcgta
agctgtgccgatgagggggaggagggggctggaggggtgcgcaggggtgtgctggagagc
ccggtgtgtgggttcattgtggtgactaacgtagacacacaggcacaggtgatgaccgtg
ctctcgcccgcccccagacccctccccagacacacactgctcatcatggacattcgcttc
atcgacctcaaatag
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