Salvelinus sp. IW2-2015 (Arctic char): 111965769
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Entry
111965769 CDS
T05762
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111965769
09124 Replication and repair
03420 Nucleotide excision repair
111965769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111965769
03400 DNA repair and recombination proteins [BR:
salp03400
]
111965769
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111965769
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111965769
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111965769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
111965769
NCBI-ProteinID:
XP_023845822
LinkDB
All DBs
Position
LG6.2:complement(7972065..7983589)
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AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEIDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctactttgatgagaaaggtctggtg
cgacagcagctggactcctttgacgagttcatccagatgtccgtgcagaggattgtggag
gatgcaccgcccattgacctgcaggctgaggcccagcacacctctggagaggtggaggac
ccgccacgctacctgctgaagtttgaacagatctacctttccaaacccactcactgggaa
agagatggagcaccctcccctatgatgcccaacgaagccagactccggaacctcacgtac
tctgctcccctgtacgtggacatcaccaagaccatcatcaaggagggcgaggaccagctg
cagacccagcaccaaaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacggaccgtgatctctgtgagctcaacgagtgcccgctagat
cccgggggctacttcatcatcaacggctctgagaaggtcctgattgcccaagaaaagatg
gccacgaacacagtgtacgtctttgccaagaaggactcaaagtacgcatacacaggggag
tgccgctcctgcctggagaactcctcgcgscccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaagccctcyctggacgaggcctttgtgatccaggagcagaacgttgccctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaagagaggaggatcaagtacgccaag
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaaa
aaggcctatttcttagggtacatggtccacagactgctattggctgccctgggcagaaga
gagctggatgacagggatcactacggcaacaaaagattggacctggctgggcctctgttg
gctttcctgttccgaggaatgttcaagaacctgctgaaagagatccgcatctacgcccag
aagttcattgacagagggaaagacttcaacctggagttggccatcaagacgcgcatcatc
tccgatggcctgaagtactctcttgccacggggaactggggtgatgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgacctttgcctcaaccctctcc
catcttcgacgggtgaactcccccatcggtcgagacggcaagctagccaagcccaggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagacccccgagggtcatgctgta
ggcctggtgaagaacctggccctcatggcttacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
atcgcagatgccacaaagatctttgtgaatggctgctgggtgggaatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtatccatgatcagagacatccgagagagggagatccgcatctacacagacgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaagagacagtgatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttctatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccatgtgctctactacccccagaaacccttagtcacc
actcgctctatggagtacctgcgtttcagagagctcccagcaggtatcaattctattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctataaagaacaagagtcaaag
aaagggtttgatcaggaggaaatctttgaaaaacccacacgcgaaacatgttcgggtatg
aggcacgccatttacgacaagctggacgacgacggcttgatagctcctggcgtgcgcgtc
tccggcgaggacgtgatcatcggcaagacggtgaccctgccggagatcgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctataagttctgcaag
atcagggttcgctctgttcgtatcccccagattggtgacaagtttgccagtcgacacggg
cagaagggtacttgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccatgccatcccctctcgtatgacagtcggccat
ttgatcgagtgcctgcagggcaaggtttcagccaacaaaggggagattggagacgccaca
cctttcaacgatgcggtcaacgtgcagaaggtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggttttaccggccgtaagattacctctcag
atcttyctcggtcccacatactaccaacgcctaaagcacatggtggacgacaagatccac
tctcgggcccgaggccctgtccagatcctcaacagacagcccatggagggcagatcacgt
gatggaggtcttcgttttggggagatggagcgtgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgtttgaggcgtctgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgcacacacacctacgagtgcaggggctgt
cgcaacaaaacacagatctctctggtcagaatgccatacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgcatgatgaccagttag
DBGET
integrated database retrieval system
