Salvelinus sp. IW2-2015 (Arctic char): 111966041
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Entry
111966041 CDS
T05762
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111966041
09124 Replication and repair
03420 Nucleotide excision repair
111966041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111966041
03019 Messenger RNA biogenesis [BR:
salp03019
]
111966041
03400 DNA repair and recombination proteins [BR:
salp03400
]
111966041
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
111966041
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111966041
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111966041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
Motif
Other DBs
NCBI-GeneID:
111966041
NCBI-ProteinID:
XP_023846255
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All DBs
Position
LG6.2:complement(25972524..25978510)
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AA seq
172 aa
AA seq
DB search
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aatctcctgaacactgtgaaacagaagctcttcacagaggtggagggaacatgcacagga
aaatatggattcgtcattgcggtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggatttgtgctttaccccgtcaagtacaaggctattgtcttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggactgttcacagag
atcggccccatgtcctgtttcatctctcgtcattccattccctcagagatggagtttgac
cccaactcaaatcctccctgttataagaccactgatgaggacattgtaatccaacaggat
gatgagattcggttaaagatcgtgggaacaagagtggataaaaacgacatttttgctatt
ggatccctcatggacgattacctgggtcttgtcagctga
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