Salvelinus sp. IW2-2015 (Arctic char): 111966281
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Entry
111966281 CDS
T05762
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111966281 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111966281 (xpc)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111966281 (xpc)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
111966281
NCBI-ProteinID:
XP_023846557
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Position
LG7:complement(6577985..6587968)
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AA seq
891 aa
AA seq
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MAKRKESADTAVKTDTKKLKKVAKGKAGGLRAKKENGEETEKVPRKAKQKSHLSKPIVGD
TTENHTSKYFQDKTPVKEEPADMSPESDIIPPFIRARKDTVKPVKKEEEDEDSEEDEDWE
EVEGPVEPEEPALPSQPVEIEIETPDIIQKRQKREKRKAEFETYLRRMMNRFNKDVVEDT
HKVHLMCLLANGMFRNRLCSTPDLLAISLSLLPTHFAMVAKERIDTNYVSGLLKWFGATF
TLNPELPCEERPDPQGLLERRLGSLTARDHQEMTHLFLLMLRSLQLFCRLVLSLQPLSLK
PPSAKSKAKNSGSPPRTSPSQKKPPEESPSEPKVSPGSKRPAGGKAERGGKKAKKKEAGE
TGKAVSVGQKPKNSKRRSIASKVSYKEESSEGEGPSDGEEFQLTNEEDSEDSEGGARAKK
AKGGKSKGKSTAPQKTSSGGKKKVKSEEEDDDWEGNEEGEEEQGMKRGKRKEGKGADEWL
EVYLEKTGCWVCVEVLQGVGQPQLCSKQATHPMTYVVAVDGDGHLKDLGSKYDPTWMTST
RKRRVDEEWWEVTLEPFLGPESERDVQEDKELQLKLLDKPLPTSIAEFKNHPLYALKRHL
LKYEALYPSTAAILGYCRGEPVYSRDCIHTLHSRDTWLKEARTVRLGEEPCKMVRGFSNR
SRKVRVASEQKDKDDLPLLGKWQTEEYQPPVAVVPRNDFGNVYLFKPCMQPVGCVHLRLP
NLQRVAKKLDMDCAAAVTGFDFHGGYSHAVTDGYIVCEEHEEILRAAWVEDREIQRQKEK
EKREKRALANWTLLVKSLLIRERLQRRYGKKGPTPGGGLDQLKSQDREGVEGLSSEEEGE
GGPNTASAALAQAWPQNRQGEQDGGTGGSSKTISKRQKRGQEKHLFPFEKV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtaaagagtctgcagacacagcagtgaagacagacacaaagaaactgaag
aaggttgcaaaaggcaaagctggaggactaagagccaaaaaagagaatggagaggaaacg
gagaaggttccgagaaaagccaagcaaaaatcccatctctctaaacctatagtaggggac
acaaccgaaaaccacaccagcaaatacttccaggacaagactccagtgaaggaggagcct
gctgatatgagtcctgagagtgatatcatccctccttttatcagagccagaaaagacaca
gtaaagcctgtgaaaaaagaagaagaagatgaggacagcgaggaggatgaagactgggag
gaagtggaaggtccagtggaaccagaagagccagccctgccctcacagcccgtggagata
gagattgagaccccagacatcatccaaaaaaggcagaaaagggagaagaggaaggcggag
tttgagacctatttgcgacgcatgatgaaccgcttcaacaaagatgtggtggaggacaca
cacaaggtccacctcatgtgtcttttagccaacgggatgttccggaaccggttgtgtagt
acaccggacctgctggccatcagcctgtctctgctgcccacccactttgccatggtggcc
aaggaacgcattgacaccaactacgtctctggcctgctcaagtggtttggggcgacgttc
acgcttaacccggagcttccctgtgaggagaggcccgacccacagggcctgctggagagg
aggctgggcagcctcaccgctagagaccaccaggaaatgacacatctgttcctattgatg
ctgaggtcgttacagctcttctgtcgactggtgctctctctgcagcccctgtcactgaag
cccccgtcagccaagagcaaggccaagaactcaggcagcccgccgaggacgagtccatcg
cagaagaaacctccagaagagagcccctcagagcccaaggtatccccagggtccaagagg
ccggcaggggggaaggccgagagaggagggaagaaggcaaaaaagaaagaggcaggggag
acgggaaaggctgtgtcggtgggacagaaacccaagaactccaagcgccgcagcatagcc
tcgaaggtgagctacaaagaggagagcagtgaaggggaggggccaagtgatggggaggag
ttccagctgaccaatgaggaagacagtgaggactctgagggaggagccagagccaagaaa
gcaaaaggaggtaagagcaagggcaagagtacagctccacagaaaacaagtagtggaggc
aagaagaaagtgaagagtgaagaggaggatgacgattgggagggaaacgaagagggggag
gaagagcaggggatgaagcggggcaagaggaaggaggggaagggtgcagacgagtggctg
gaggtgtacctggagaagactgggtgctgggtctgtgtggaagtgctgcaaggcgtgggg
cagcctcaactgtgctccaagcaggccacccatcccatgacctacgtggtagccgtggac
ggggacggtcacctgaaggatctgggcagcaagtacgaccccacctggatgacctccacc
agaaagcgccgggtggacgaggagtggtgggaggtgacgctagagccattcctcggcccc
gaatccgagagggacgtccaggaggataaagagctccagttgaagttgctggacaagcca
ttgcccacgtcgatagcagagttcaaaaaccacccgctgtacgccctgaagagacatcta
ctgaaatatgaagctctctacccctccacagcagccatcctcgggtactgcaggggagag
cctgtctattccagggactgtattcacacgctacactcccgagacacctggctgaaggag
gcgcgcaccgtccgtctaggagaggagccctgcaagatggtgagagggttttccaatcgc
tctcggaaagtcagggtggcgtcagagcagaaggacaaagatgacctgcccctgcttggt
aaatggcagacagaggagtaccagccaccagtagctgtagtgcctcgtaacgacttcggc
aacgtttacctgttcaagccctgcatgcagccagttggctgtgtccacctgcgtctgcct
aacctccagagagtggctaagaagctggacatggactgtgccgctgctgtcactggcttt
gactttcacggtggctactctcatgctgtaacggacggctacattgtgtgtgaggagcat
gaggagatcctgagagcagcctgggtggaagaccgagagatccagagacaaaaggagaaa
gagaagcgggaaaagagggcattggccaactggactctgctggtgaagagcctgctgatc
agggagagactacagcgtcgctatgggaagaaaggcccaacccccggaggaggcctggac
caactgaagagccaggatagggaaggggtagagggtctatcgtctgaagaggaaggcgaa
ggtgggccgaacacggcttctgccgcactggctcaggcctggccccagaacagacagggg
gagcaggacggtggcacggggggatcctccaaaactatatccaaacggcagaaaaggggc
caggaaaagcaccttttcccctttgagaaagtatga
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