Salvelinus sp. IW2-2015 (Arctic char): 111966611
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Entry
111966611 CDS
T05762
Name
(RefSeq) neurofascin isoform X1
KO
K06757
neurofascin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04514
Cell adhesion molecule (CAM) interaction
salp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
111966611
04517 IgSF CAM signaling
111966611
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
salp04515
]
111966611
Cell adhesion molecules [BR:
salp04515
]
Immunoglobulin superfamily
L1 family
111966611
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
Ig_5
FN3_DSCAM-DSCAML_C
Ig_6
C2-set_2
Ig_4
Ig_PDGFR_d4
V-set_CD47
Fn3_ROS1
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
111966611
NCBI-ProteinID:
XP_023847179
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Position
LG7:22570903..22598307
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AA seq
1187 aa
AA seq
DB search
MGMLARSTLLLLLWQGLSAIDVPLEIRQPPTIIKQSLKDHVVDPRDNMVVECEAKGTPHP
IFSWRRNGKYFNVARDPQASMRRRSGTLDIYAWADPEAYEGEYQCVATNEHGTAYSNKIN
LRISRAPLWPREVLEPVTVSVGLPLVLDCSPPPGPPKPETYWMSKCSSGRPFNWPHQPHP
PVMLPIKQDRRVSMGVNGDLYFSNVYVNDSATDYCCNARFPFKNIIQQKMPITVRVLTTR
MVSEAAPTFLSPAGRSSSQTVLQGEELLLECIAAGVPTPVITWTKDGEELDTTNMKVKNY
NKLLQIPKASFENSGEYTCTATNKIGYLEHTITVRIKAAPFWLEKPSNLVLAPEENARLV
CRSDGIPRPSIRWFINGDTIEDATPVPNREVSGDTITFRSVTVANTGVYQCNASNQYGYL
FANAYINVLHAKPRILRPRTDLVKVIEGRRAWLDCRYFGSPVPDLRWSKYGLGNLEGNHF
KVHSNGTLQIRGTRMDDQGTYVCIVSNKEGRDENQVKLEVKESTKILKRPDNMRVLRGTD
VRLECKAQHDPTVAITTTWLKNKQFLIIGWRLSLDESTLVITNVNRGDEGNYTCIIKTEM
DKNTASARLVVMDRPDPPSNLQLSDPFERSVRLTWTPGDSNHSPIKEYLVQYDDDDWLPF
KWRNLSTYPGNLNSVILQLSPFIIYEFRVIAINDIGMSKPSRSSANFQTGGAPPDAIPKN
IQGVGTWRNNMMISWEALNNREWNGPHLKYLVWWKRRDSREEWKNATTWWCKYYIYDTDT
FTPYEIKVQAVNDFGMGPESTVIIGYSGEDRPTAAPLNLRVSRIEATKVTVHWDPVARSS
IMGELKEYKVYFWRDSSQLRWLSVSRAMKSKAFPASGPRLSGVLXGLIPYSNYKMYIVVA
NNRYEGHPSNTIEFSTPEGTPSAPRSFRIQQRHLDMIWVDWDTPAEPNGIVTGYILKYQT
VNATQGEELHVEQFPPNTTSFAVRRYDRYTRYRFTIAAQTRIGVGEWYTEESPHYTTEAY
AREQVDLSTQGWVIGVMCAVALFVLILLVVCFIKRSRGGKYPVRDKKEVTLEPVDDKDQE
GSFDYRSLERISRVTTIPYSARREEETKVGRGQTTVDTMMKRTDSDDSLVDYGDGQEIEF
NEDGSFIGQYTGHKERDDRDTEFSESRSQEAHSPMAHSPMSPIYSFA
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggggatgctggccagatccactctattactactgttatggcaaggactgtctgccatt
gacgtcccactggaaatcagacagccccccaccattataaaacagtcgttgaaggatcat
gtcgtggaccccagagacaacatggtcgttgagtgtgaagccaaaggcacccctcaccca
attttctcatggaggcgtaatgggaagtatttcaatgtggcacgggaccctcaggcctcg
atgaggagacgttcggggacgctggacatctatgcctgggctgacccggaggcttatgag
ggggagtaccagtgtgttgccaccaatgagcatggcactgcatactcaaacaagatcaac
ctacgcatctctagggcccctctgtggcccagagaggtgttggaaccggtaacggtgagt
gttggtcttcctctggtcttggactgcagccctcctccaggccctcccaaacctgagaca
tattggatgagcaagtgttcatcagggagacctttcaactggcctcaccagccccacccc
ccagtcatgctgcctatcaaacaagaccgtagagtgtctatgggggtgaatggagatctc
tacttctctaatgtctacgtcaatgactctgccaccgactactgctgcaacgcacgcttc
cctttcaaaaacatcatccaacagaagatgcctattaccgtaagagtccttacaacccgc
atggtgtctgaggccgctcccaccttcctgtctccagccgggaggtccagctcccagact
gttctgcagggggaggagctgctcctcgagtgcatcgctgctggagttccaacccctgtc
atcacatggaccaaagatggagaggaactggacacgaccaacatgaaggtgaagaactac
aacaagttactgcagatccctaaggcctcttttgagaactctggtgaatacacgtgcact
gccacaaacaagattggatacctggaacacaccatcactgtccggatcaaagcggctccg
ttctggttggaaaagcccagtaacctggtgcttgccccagaggagaatgcacgcttagtg
tgccgctctgacggcatcccccggcccagtatccgttggttcatcaacggagatacaata
gaggatgctactccagtaccaaacagggaggtgtcaggagacacaattaccttccgctct
gtgactgtggcgaacactggtgtttaccagtgcaatgcctctaaccagtatggctacctg
tttgccaatgcctacatcaacgtactgcatgcaaagccacgtatccttaggcctaggact
gatctggtgaaggtcattgagggcagacgcgcctggctagactgccgctattttggctcg
cccgtgcctgatctgcgctggtctaagtatggactgggcaacctggaggggaatcacttt
aaagtacacagcaacgggacactacagatcagaggcacccgtatggatgaccaggggaca
tatgtgtgtattgtcagcaacaaggaaggacgagatgaaaaccaggtcaaactagaggtc
aaagagtccaccaaaattctcaaacgcccagataatatgagagtcctccgggggactgat
gtccggttggagtgtaaggcccaacatgaccccacggtcgccatcaccaccacctggctg
aagaacaaacagttcctcatcataggctggaggctgtcgctggatgaatcaactctggtc
atcacaaacgtcaacagaggagacgagggcaattacacctgcatcatcaagactgagatg
gacaagaacactgcctccgcccgcctggtggtgatggatcgtccagaccccccttcaaac
ttgcagttgtcggacccctttgagcgcagcgtcaggcttacctggacccctggagatagc
aatcacagtcctatcaaagaatacctggtgcagtatgatgatgacgactggttacctttc
aagtggagaaacctttccacgtaccctggaaacttgaactctgtcattctgcaactgtca
ccattcattatctatgaatttagggtcattgctatcaatgacattggtatgagtaaaccc
agtcgctcgtcagccaacttccagactggtggagcacctccagacgcratccctaaaaac
atccaaggagtgggaacatggagaaacaacatgatgatcagctgggaggcactaaacaac
agagagtggaacggtccccacctaaagtacttggtgtggtggaaacggagggattccagg
gaggagtggaagaacgctaccacttggtggtgtaaatactacatctatgacacagacacc
ttcacaccatatgagataaaggtccaggctgtcaatgactttgggatgggkccagagtcc
actgtcatcataggctactctggagaagaccgtcccactgctgcccccctcaacctgcgt
gtgtccaggatagaggccactaaggtcaccgtgcactgggaccccgtggctcgcagcagc
atcatgggagaactgaaggaatacaaggtgtacttctggcgagacagtagccagctgagg
tggctgagtgtgagcagggccatgaagtctaaagcctttccagccagcgggccgcgtctc
tctggtgtcctgscgggactcatcccttacagcaactacaagatgtacatagtggtggcc
aacaaccgatacgagggacatcccagtaacaccatagagttctccactccagagggaaca
ccctctgctccaagatccttcagaatccagcagagacatttggacatgatctgggtggac
tgggacactcctgcagagcccaatggcatcgtcaccggatacatactcaaatatcagaca
gtgaatgcaactcagggggaggaattgcacgttgagcaatttcccccaaacaccaccagt
tttgctgttcgccgatatgatcgctacacccgctatagattcaccatagcagcacagact
agaatcggggtaggagaatggtacacagaggaatcaccccattatacaactgaagcttat
gctcgggagcaggtggacctctccactcagggctgggtaattggtgtgatgtgtgctgtg
gctctcttcgtgctcatcctgctggtcgtctgctttatcaaaaggagccgagggggcaaa
tacccagtacgggacaagaaagaagtgacattggagccagtggatgacaaagatcaggag
ggatcatttgactatcggtctctggaaaggataagtcgtgtcaccaccattccctactct
gcccgacgggaggaagagactaaagttggcaggggccagacgacagtagacaccatgatg
aaacggacagatagtgacgacagtctggtggactatggtgatggacaggagattgagttc
aacgaggacggctccttcattggccagtacactggacacaaggagagggatgacagagac
acagagttcagtgagagcaggagccaggaagcccactckccgatggcccactcccccatg
agccccatctattcatttgcataa
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