Salvelinus sp. IW2-2015 (Arctic char): 111967189
Help
Entry
111967189 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111967189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111967189
NCBI-ProteinID:
XP_024002810
LinkDB
All DBs
Position
LG1:114388..143655
Genome browser
AA seq
1679 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSGLLSIGGGESTSRAITG
GSSSVSVSSSAAAGSVGGAKSGYGGGSVSKSTTITTIESPSLSSGASGASGAAFRSSGAS
GASFGASKTSGSLSVSGGGLMSSSSFVTGXSSGGSSSGFVSSSKGAGAGGGGFVTGSSSG
FVSSSKGAGGGGNSFVTGSSSGSSSGFASSSGTGIGGGDSSSAKMSTGGLGSVTVSTVTK
SNYSSLAGAGSGGVKRGGAQGSASSSVSYSPTPMERKSMTTTMIARSMGYEGRSSGNSSP
EYTRREYAADSAAARSPTRGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSRSSS
ISPPRSPTSTLPIPRKASVETRTMPNSSQSGQYDSATLDSVMPSYVWSGPTAGGYGYHSN
AINRSPTSTLQHSPTTLTATGLHNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGILTA
NGVNAQTVYGVQKNVTSTGVSTTAVAPSSPTSDEVFAKEYKFMLLEKEKAPVKKETERLI
MAKDTGKQFSSAGTAIAXSEDSLKKEKKKVSSFVEPATARTTETNAGSLMKVSTKDKATY
AEIRKDESGGGFWSCCSWLKWLLGLLLGLLLLLGLLLGLIALAEEVKRLKARVDALEQAS
SSSSAHSSRXSSSSAINIIDPLESAYIDKTSSPSSTTLLRSDNGINLGVAAGAGPGSANG
PGQDPVALQRAVQQIVRTELQSDTVRATLADSMKGARGEPGTKGDQGGPGVKGDNGFPGL
PGPPGQMGHSGQEGPRGPKGNAGEAGAEGSPGQKGREGQTGSRGEPGPPGFGEKGDKGSP
GEPGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAGPPGNK
GEPGEKGLRGTSGDPGQRGLPGPDGANGSKGPAGAPGADGEKGSRGDKGSDGLQGPRGPA
GPPGDSGLPGIPGLQGPPGIAGNPGQPGGKGEAGEPGRIINAAGSSSVXIPGPPGSPGPT
GVSGSPGLSGPVGPAGLPGTPGPRGERGEEGEKGDQGKPGITDVHLRLVFLAHLALQGPQ
ENQVTVPQXLKVLKESQVYKVRVPQVLKVLKESQVYQVRVPQVRKVLKESQVYQVRVPQV
LKVLKESQVYQVRVSQVLKVLKESQVYQVLVCPAPEVIRESQVASCPTQEPSSLGPQDQL
VFRDHQDPRVTKVTQVSPVYQEFPEIPVXVGFPGPQGQPGGPGPEGDSGLPGPQGPEGPE
GQPGPKGEAGVPGAPGIPGYSSGGSSRSXPGAPGPPGPPGXPGXDGPPGSGDGTPDXRQY
ITEYLKSDGVREYMSGPPGPPGVPGPPGGESVDDLASRVXAYIQSGGIASGVPGPPGPPG
APGGGSTSLNDIISLLQREEVRQYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGRVLTL
MNDAEYRGVLGAQGSPGPPGVPGPAGPQGPAGPSGQAPYSGSGYRLEEVKDYIQSGLRGG
MFGPPGPPGPPGPQGNKGEQGNSGYGHAFDHRTSEGRRLAETETDFSNIAVRVTDYIKYH
GLLRDVVENRSQLEKSQVVQGPPGPPGPPGVPGFSRVFGSHSNVTDLMEYIRDHGNIVGP
PGRPGQKGDIGHTGHKGERGLDGIPGRTDLPGLEWKRWGKGEKGEYTLVTNRRKRNVGV
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggaaaggtcgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggtggtctctct
tcgaggagtgggctgctctctattggaggaggagagtctaccagtagagccatcacagga
ggcagtagctcagtgtcagtatcctcctctgctgcagccgggtctgtgggtggagctaag
tctgggtacggagggggatccgtcagcaaatcaaccaccattaccactatagagtccccc
tctttatcctccggtgcttcaggggcctctggcgcagcttttcggtcttcaggggcttcg
ggggcatcgttcggggcgagcaagaccagcggctccctctccgtttctggagggggtctt
atgtctagctccagttttgtcactggtmccagttctggtggttccagttctggttttgtc
tctagttccaaaggagcaggagcaggaggaggcggttttgtcactggttctagttctggt
tttgtctctagttccaaaggagcaggaggaggaggaaacagttttgtgactggttccagt
tctggttctagttctggttttgcctctagttctggtaccggaatcggaggaggggattct
tctagtgccaaaatgtcgaccggcggcttgggctctgtgaccgtttccacggttaccaag
tccaactacagctccttggcgggggcgggttcagggggtgtgaaaaggggcggggcacag
gggtctgcytcctcttctgtcagctactcccccacccccatggagagaaagagcatgacc
accaccatgatcgcccgctccatgggctacgaaggaagatccagtggaaactcatctccg
gaatacacaaggagagaatatgctgcagayagtgcagctgccaggtcacccaccagaggg
cggagccacagcagagagagtgagatcagatgcagactgcagagtgcctctcccactgcc
aaaagatggacggagctggatgatgtgaagcggctgctgaaggggagtcgctccagcagc
atcagcccccctcgctcccccaccagcaccctccctatccccaggaaggccagtgtagag
accagaaccatgccaaacagctcccagtcaggccagtacgacagtgccaccctggactcc
gtaatgccttcctacgtgtggtcaggccccacggctggaggctatggttaccacagcaac
gccatcaaccggtcccccacctccaccctccaacactcacccaccacactcacagccacg
gggcttcataacaacctggcrctcagctctacatccatgaactccggactctctgcctct
agcactgttcacggtatgcagaataacctggccagcaccactggcggtatcctaacagct
aatggagtcaacgcacaaacagtctatggtgtgcagaagaatgtcacaagcacaggggtg
tccacaaccgcagtggcacccagcagtcctaccagtgacgaggtcttcgccaaagaatac
aaattcatgctgctggagaaagagaaagctcccgtcaaaaaggagacggagagactcatc
atggccaaagataccggcaaacagttctcctctgctggcactgctattgcctartctgag
gactcactgaagaaggagaagaagaaggtgtccagctttgtggagccagctacagccaga
accacagaaactaacgctggatccttgatgaaagtctcaacgaaagacaaagcaacctat
gcagagatacgtaaggacgagtctggaggaggkttctggtcctgctgttcctggttgaag
tggctgctgggcctcctgctgggtcttctgctcctcctggggctcctcctgggactcatc
gccctggccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaacaagcctcc
agctcttcctcagcccattccagtcgcrtctcctcctcctcagccatcaacatcatagac
cctctggagtctgcatacatagacaagacctcctctccctcctctaccacactgctccgc
tctgataatggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaatgga
ccaggccaagaccctgtagctctgcaaagggcagtacagcagatagtcaggactgagctg
cagtccgatactgtacgagcaacacttgcagactcaatgaaaggagcgagaggagagcct
gggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccctggccta
ccaggtcctccaggtcagatgggtcacagtggacaggagggcccgaggggacctaaagga
aatgcaggtgaagctggtgcagagggctccccaggccagaagggccgagaaggacaaacg
ggatcacgtggagagcctggtcctccagggtttggagagaaaggggacaaaggttctcct
ggtgaacccggagggcctgggcctgctggcactgctgggcctgttgggcctaaagggtca
gtgggtggtcagggtgctacaggtatcccaggaactcctggtccacagggtttcagaggt
gaagcaggcgctccgggaccgaaaggagagaagggaccagctggacctccaggaaataag
ggcgagccaggagagaaaggactccgcggaacatcaggtgacccaggtcaaagaggactt
ccyggaccagacggagcaaatggatccaaaggacctgcaggtgctcccggggcmgacggt
gaaaaaggctctagaggtgacaagggatcggatgggttgcaaggtcccagaggaccagca
ggacctccaggagattcaggcctcccaggcattcccgggcttcaaggtccaccaggtata
gcaggtaatcctggtcagcctggaggtaaaggcgaagctggagaacctggtagaatcatc
aatgcagctggttccagttcggttmccatccccggacctccgggcagccccggacccact
ggtgtttccggatcccctggactctcaggtcctgttggccctgctggtcttcctggaacg
ccwggtcccaggggagaaaggggagaggaaggagagaagggagaccagggaaagcctggt
attactgacgtgcacctgcggctagtcttcctggcccacctggccctccagggcccccag
gagaaccaggtaacggtcccccaggwcctaaaggtcctcaaggagagccaggtgtacaag
gtaagggtcccccaggtcctaaaggtcctcaaggagagccaggtgtaccaggtaagggtc
ccccaggttcggaaggtcctcaaggagagccaggtgtaccaggtaagggtcccccaggtc
ctgaaggtcctcaaggagagccaggtgtatcaggtaagggtctcccaggtcctgaaggtc
ctcaaggagagccaggtgtaccaggtgttggtgtgcccggcccccgaggtgataagggag
agccaggtagcttcgtgcccaactcaggaaccttcttcgctgggcccccaggaccaactg
gtcttccgggatcaccaggaccccagggttaccaaggtgacccaggtcagcccggtttac
caggagttcccggagatcccggtgtrggtgggtttccctggaccccagggacaacctgga
ggtccaggaccagaaggggacagtggacttccagggccccaaggrccagagggccccgag
gggcaaccgggtccaaaaggtgaggctggtgttccaggtgctccaggaatccctggctac
tccagtggmggatcatccaggagtrcccctggagcaccaggtccacctggacctcccggg
gkrcccggccytgatgggccacctgggtctggggatggaacaccggacytccgtcaatac
atcacagaatacctcaagagtgacggtgtcagggagtacatgtcgggtcctccgggtcct
ccgggtgtaccggggccccctggtggcgagtcagtggacgatcttgctagtcgcgtcatr
gcgtacatccagagtggaggtattgctagtggggtgcctggacctccaggcccgcctggc
gctcccggtggaggcagtacatcgctaaatgacatcatcagccttctacagagggaggaa
gtgcgacagtacgtcatcggtcctcctggccctgctggacctcctggcatcccagggatc
ccatggagaggaggctatggctttaatacccatgaggtggctggacgagtcctcactcta
atgaatgatgctgaatacagaggrgtcttgggcgctcagggttctcctggtccacctggt
gttccaggccctgctggccctcaaggccctgccggtccttcaggacaggccccctacagc
ggctctggatacaggctggaggaggtcaaggactacatacagagtggtctaagaggggga
atgtttgggcccccaggccccccaggtccccctggaccccagggaaacaagggagagcag
ggtaactctgggtacggccacgcctttgaccacaggaccagcgagggaagaaggctggct
gagactgagacagacttctccaatatagcggtccgagtgactgactacatcaagtaccat
ggtctgttgagggacgtcgttgagaaccggtctcagctggagaagtcacaggttgttcaa
ggacccccaggaccccctggccctcccggtgtgccaggattcagccgtgtgtttggttcc
catagtaacgtcactgaccttatggaatacatcagagaccatggaaacattgtgggaccc
cctggaaggccaggacagaaaggggacataggacatacaggtcacaaaggcgagagagga
ctggatggcatcccaggaaggacagacctccctggtctggagtggaaaaggtggggaaag
ggggagaaaggagaatacacactcgtgaccaacagaagaaagaggaatgttggwgtttga
DBGET
integrated database retrieval system
