Salvelinus sp. IW2-2015 (Arctic char): 111967305
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Entry
111967305 CDS
T05762
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111967305 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111967305 (polr1a)
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111967305 (polr1a)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111967305 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
YceG
SURF2
Motif
Other DBs
NCBI-GeneID:
111967305
NCBI-ProteinID:
XP_023847997
LinkDB
All DBs
Position
LG8:5255468..5266291
Genome browser
AA seq
1698 aa
AA seq
DB search
MHFGKEVPWRRLEGLTFGMYSAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKQKTGGDHSSP
IKHLCEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPDGFYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKQLELEEVLE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKLGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFHFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFDSIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEEEGEEESRIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDLVEEKEDQAEE
NSEEVPDEVPGDLATAEPGGAGARKRSKQKSTHTQDSMRVNTVLETSSSIEDYSYDSQQG
LWCEVTLVLPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKALELKTEG
INMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLS
LVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQAIMQGSHDKLVSPSACLVV
GKVVKGGTGIFDLKQPLQ
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgcattttgggaaagaagtaccatggaggcggctggagggactgacatttggcatgtac
tctgccgaagaaataagaaagttgagtgtcaagaacattaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgatctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagttggagcat
gtgctgaaccagttcctggaaggcaatgctcaagcatctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacagaagacaggcggcgatcacagctcacca
atcaagcatctctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgcccccactgcaagagtggccgctcacaagtgcgtagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccg
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactgtgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagttggagagctcacccgatggcttttacccggaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaagcagttggagctggaggaggtactggaa
gccgacccgtctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaacatagtctttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gacggtttgttcaggaagcacatgatgggtaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaatggtcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaacctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacactcgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcgggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcattccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgctg
gtgggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgc
tacgagctgtatggaggagagaccagtggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccggggcttcactatgggtgtggaggatatcttggtgaaa
ctaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccctgcaggcagcctttaacctgcctgacaccgtggatgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaatatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcgtgtttgctgggtcagattgagctagagggccgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtacgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgacggcagcgtggtccagtttctttatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcacttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctctg
gagaacctggccaatggcagggatactgccactctgaaattggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcagagacgtttgacagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacccgagggaagctcgaagaac
cttgatgcacaaagactgaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcataggagagccctccactcagatg
accctcaacaccttccactttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagaagaggagggggaggaggagagcaggattgtggacgacgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaggaagtg
gattatgagagtgaggagggagaggatctggtggaggaaaaagaggaccaggcagaggag
aactctgaagaggtgcctgatgaggtgcccggtgacctggccactgcagagcctggtggt
gctggggcaaggaagagatcaaagcagaaaagcacacacacacaggacagcatgagggtc
aacactgtgctggaaactagttccagcatcgaggactattcctatgacagccagcagggt
ctctggtgtgaggttacgctcgtcctgcctgtcagcaaggtgcactttgacctgacgtcg
ctggtggtggccgtggcccaaaatgcagtggtgatggagactaagggcatcaccagatgt
ctgctcagtgaggtcactaagaaagatggctccaaggcgctggagctcaaaactgagggc
atcaacatgcacgagctgtttaaccacagtgaaattcttgatgtgaatcggctgtactcc
aatgaggtccacgccatggcaaacacgtacggcattgaggtggccctgagagtcattgag
aaggaaattaaagatgtcttcgctgtctatggtattgaggtggaccccaggcatttatcc
ttggtggcagactacatgtgttttgagggcgtgtacaaacctctcaaccgcttcgccatc
cagtccaactcctctccactgcaacagatgaccttcgagacgagctacaagttcctgaag
caggccattatgcagggctcccatgataagttggtctctccctcagcttgcttagtggtg
ggtaaggttgtaaaaggagggaccgggatctttgatctcaagcagccattgcaataa
DBGET
integrated database retrieval system
