Salvelinus sp. IW2-2015 (Arctic char): 111967406 Help Entry 111967406         CDS       T05762                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism salp  Salvelinus sp. IW2-2015 (Arctic char) Pathway salp03040   Spliceosome salp04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:salp00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     111967406   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     111967406  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:salp03041]     111967406    04121 Ubiquitin system [BR:salp04121]     111967406    03400 DNA repair and recombination proteins [BR:salp03400]     111967406 Enzymes [BR:salp01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      111967406 Spliceosome [BR:salp03041]  Complex B   Other components    Prp19 complex     111967406  Complex C    Prp19-CDC5 complex     111967406 Ubiquitin system [BR:salp04121]  Ubiquitin ligases (E3)   U-box type E3    111967406 DNA repair and recombination proteins [BR:salp03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     111967406 SSDB OrthologParalogGFIT Motif Pfam:  WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_EML_2 Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Prp19 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st DSE1_N ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_WDR41 Beta-prop_TEP1_C ASA1 CFAP251_N Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_HPS5 WDR90_beta-prop_4th PAC11 Beta-prop_VPS8 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF4 WD40_RFWD3 U-box Beta-prop_WDR35_TULP_N Beta-prop_ACSF4 PROPPIN Beta-prop_Nup120_160 Beta-prop_DCAF12 eIF2A B-prop_COPA_B_2nd Alpha_humulene_synt RMC1_N Cytochrom_D1 Tricorn_2nd Beta-prop_LRRK2 Nucleoporin_N zf-Nse ATG16 CCDC13 Motif Other DBs NCBI-GeneID:  111967406 NCBI-ProteinID:  XP_023848155 LinkDB All DBs Position LG8:complement(11704859..11711641) Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKFIAENGVDPMNGQPLSEEQLIDIKVSHP IRPKAASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVAPQAMPASQPATGGAGGEPMEVSEQVGMTPEIIQKLQDK ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDICPSDTNKVLT GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGVALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT GVAFGDNAQFLSSAGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctttggtttgcgcaatttccaatgaggtcccggagcacccctgcgtgtccccggtg tccaaccaggtgttcgagcgccgactgatcgagaagttcatcgcggagaatggagttgac cccatgaacggccaaccactgtccgaggagcaacttatcgatattaaagtgtctcatcct atccgaccaaaggctgcctccgctaccagtattcctgccatactcaagtctctgcaagat gagtgggatgcggtgatgctccacagtttcactctgaggcagcagctgcagacgactcgc caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcatcgcccgtctc acaaaggaggttactgcagctagagaggccctggccacactcaagccccaagccggattg gtcgcccctcaggctatgcctgcctctcagcctgccactgggggtgcaggtggggaaccc atggaggttagtgagcaggtgggaatgaccccagagatcatccagaagctccaagataag gccaccgtccttaccacagagcgaaagaagagaggcaagactgtgccagaggagctggtc agggctgaggatctgagcaagtaccgacaagtggcttcccacgctggtcttcatagtgcc agtgtcccaggaatcctgtgtatggacatctgtccttcagatactaacaaagtactcact ggaggggctgataagaacgtggttgtgtttgataagaaggaggagcagatcatcgccacc ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtcagtggtg ttctctgcctctccagacagcaccatccgggtgtggtctgttaccgggggcaactgtgtc caggtggtgagagctcacgaggcgagcgtgaccgggctgtcacttcacgccaccggagac tacctgcttagctcctccgaggaccagtactgggccttctctgacatccaaactggccga gtccttaccaaagtcactgatgaggctgctggtgttgctctgacttgtgctcagttccac cctgacggtctgatcttcgggacgggaacagctgactcccaaatcaagatctgggatctg aaggagcgcaccaacgtggccaacttccccggtcactccggtcctgtcacctccatcgcc ttctctgagaacggatactacctggccacaggtgcccaggacagctctgtgaagctgtgg gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactacgaagttaag tctctggtgtttgatcagagtggtacgtacttggctgtgggtggatctgacatcagggtg tacatctgcaagcagtggtcggaggtcctaaacttcagcgaccactctggcctggtgacc ggcgtggcgtttggagacaatgctcagttcctttcctctgccggaatggacagaagcctt aagttctacagcctgtaa

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