Salvelinus sp. IW2-2015 (Arctic char): 111967508
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Entry
111967508 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-13-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111967508
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111967508
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
111967508
NCBI-ProteinID:
XP_023848341
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All DBs
Position
LG1:complement(39821175..39855020)
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AA seq
651 aa
AA seq
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MTCFSITSALLWRGPLGLGTSTLTTPKRMVEPSSPALHLHANSDVSMVGVSVKLEESGGE
GGGAKAEPHSSPACDWSGHQPMARPESRQLTPPLSRSPSEGSPGKEQLLRQSPVGMKGGS
RGYNHRPEGHMHPTVSEVMPTIEKLLSVDWRETFLDKSPLGGNHLKGTPESLAEKELQLL
LMINQLGGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHKIN
LLQQQIQQVNMPYVMIPAFHPNTQQLPITADNQMTMPLQPIPCKPVDYPMQLLQNSHSTP
VKRPSGTFRQEASQPLNLTSKPKGMDMGKSPSPQTFELGSLTLQGGYRPRDNHRDSPSRP
ALNLGFLGEGDVVTQAIHDAQQLLWSHGPGGRERERERDSTARMEHKESGRSDRLPHQDR
GENRQTRQTNEDHHSSDSEGPLSAPSVGLFAEVRSPPSSVHIKRPMNAFMVWAKDERRRI
LQAFPDMHNSSISKILGTRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCI
VEGRRLRVGEYKAMMKSRRQEQRGAYTHSQSEPQKLHYAPGEGQYPGGGGTVSMPTVPFT
PRYWSTTCHEGWRLRLLADLTGRSHPLPSTERGHRTARGRRVTEERGARES
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtttcagcatcaccagtgctctactgtggaggggtcctctgggtctggggacc
tccacactcaccacacctaagagaatggtggagcccagttccccagcgctgcatctccat
gccaacagtgatgtcagcatggtgggcgtcagtgtgaagttggaggagtctggaggagaa
gggggaggagccaaggctgagccacactcctctcctgcctgtgattggtcaggacatcag
ccaatggcaagaccggagtctagacagctgactcctcccctctcccgctcaccctcagag
ggctctcctggtaaggaacagcttctcagacagagtcctgttgggatgaaggggggcagc
agggggtataaccaccgaccagagggacacatgcaccccactgtcagcgaagtcatgccc
accatagagaagcttctgagtgtggactggagggagacatttctggacaaaagccccctg
ggaggcaaccacctgaaaggcactccagagtctctggcagagaaggagctgcagttgttg
ttgatgatcaaccagctgggtggtctgagggagcagctgctgggagcccactctgagcag
aggaacatggccgccttgctgctggagaaacaacagcagcagatggagctggccaggcag
cagcaggaacagattgccaaacagcagcagcagttgatccagcagcagcacaaaatcaac
ctgcttcagcaacagatccagcaggtgaacatgccctacgtgatgatcccagccttccac
cccaacacccagcaactccctatcaccgccgacaaccagatgaccatgcctctgcagcca
atcccctgcaagccagtggactatcccatgcagctgctgcagaactctcactccacccct
gtgaaaaggcccagtggtaccttccgtcaggaagccagccagcctctgaatctgacctcc
aagcccaagggaatggacatggggaagagccccagcccgcagacctttgagctgggctcg
ctgactctgcagggtgggtacagacccagggacaaccatagagacagcccttcacggcct
gcacttaacctgggtttcctgggagagggggatgtggtgacccaggccatccacgatgcc
cagcagctgctgtggagtcatgggccgggcggaagagagagggagcgagagagagacagc
actgccaggatggagcataaggagtctggtcgcagcgacaggctgccacaccaagaccgg
ggagagaacagacaaacccgccaaaccaacgaggaccaccacagcagtgactctgagggc
cccctgtctgctcctagtgtggggttgtttgcagaggttcgcagccccccctcctccgtc
cacatcaagagacccatgaacgccttcatggtctgggccaaagacgagaggcgccgtata
ctacaggccttccctgacatgcacaactcctccatcagcaagatactgggaactagatgg
aagtctatgtctaaccaggagaagcagccctactatgaggagcaggccaggctgagccga
cagcacctggagcgttaccccgactacaaatacaagccccgccccaaacgcacctgcatc
gtggaggggcggagactcagggtgggcgagtacaaagccatgatgaagagccggagacag
gagcagagaggggcatacacacacagtcaatcagagccgcagaagctgcactacgctcca
ggcgagggccaatacccaggcggcggtggaacrgtctccatgccgacggtgccattcacc
ccgcgctattggagcactacctgccacgagggttggaggctccgcctcctcgcagacttg
acgggcagatcacacccactcccctccacagagagaggccaccgtacagcgagggggagg
agagtgacagaggagagaggagcgagggagagctag
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