Salvelinus sp. IW2-2015 (Arctic char): 111967824
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Entry
111967824 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04020
Calcium signaling pathway
salp04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
111967824
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
111967824
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111967824
Ion channels [BR:
salp04040
]
Ligand-gated channels
Glutamate (ionotropic)
111967824
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
111967824
NCBI-ProteinID:
XP_023848984
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All DBs
Position
LG8:35181060..35261594
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AA seq
1443 aa
AA seq
DB search
MAAPPGQPPSSPQYPPLFLFLLLFLSSPPPLLSRPLIPHPSINVAVVFCGSAYQNEVRGH
MSREDFADFPLEVNPVTVLVNDTNPRALLTRLCETMATEKLHGVVFEDDVGSGAGPQVAE
VAQILDFLSTQTALPIVGISGGSTVVIPHKVRQHIILPSRIGSGFAEGSTFLQMGASLEQ
QIVCMFKLMEEYDWGDFVVITSMWPGYETFVDYVRSYTDTSYFLWRLQDILSLEMSVGTS
DVRAKRMLQQIDSQVLLAYCSYEEAQYLFQVAGEVGLLGPGYIWILPSLALGNTESPPPM
SFPVGLIGVITDHWRKSLRQRVREGVAIVAKGADSFRRHQGFLPEGHSDCNTPVTHINNN
TLFRHMLNVTWERKDLSFNSDGYLTNPSMAIVALDRDRLWDKVLNYMRGILQGALPVWPR
YGSFLETVSDDRHLTVATXEERPFVIVENVDPTATLHAAVRTTCLPRQSNRPRGTIVGHS
EPYTKLCCKGFCIDILKKLSRTIKFSYDLYLVTNGKHGKMISGIWNGMIGEVFYRKADMA
IGSLTINEERSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTV
VAVTVFVFEYFSPVGYNRSLVSAKAPGGPTFTXGKSVWLLWGIVFNNSVPIENPKGTTSK
IMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNG
STERNIRSNYPDMHAHMVKYNQKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLV
TIGSGKVFATTGYGIALQKDSRWKRPIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVM
SSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLLYWKLRKKLDKSPRMDFLLAISRGIYSC
FNGVEEPDHPNLANSDLTTNYAQANMLKMLRTAKDLVNSAQVETSLDHATKTIEHWGRHG
GNLPVHIPQQVTTEMVPGGFSHVTENTHTHLSPEHPLIPQYCTLGVVTSLNRQKGLARPT
PLRYTLPARTSSLYDRPLSVSSLSSPHLDLAGGDPLSSYSQPSTGRLYVEPQHISHPRSP
FIPYSELQLPDIYLSSHPPSAVSHPPHTEPSKRKRKSKSLLSGETGRGGGQRRRRREEKT
VCLAELRANHLQENHVSPHMPDSLYPGKVLCPGEEGCGGSWPLPLEELVLAGRRRLHRRP
SFLRATWGSERILQPDETPPTSLDCQSHSALPDLFPCVMADQETPTKLYNPAPLRNNLCY
PATSTRQHAYLHIRQDQRKGNGRKKLRYSNSTHLPTYREAMLGGQGGGGGVDLGGVRRAT
NLLSRQYSHYLTSYPGLPLYHGPLDLQAHSQVSSNHASPSPGTYPSPSPVCQLLPCGGGF
RGQRGLLYQDSLYGAYGANGAYREDQDPGLEPQRGDASVGLRSEDRSCVTQPWGRVSSLE
SEV
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcctccaggacagccaccttcttctccgcaatatcctcctcttttcctcttc
ctcctcctcttcctctcctcccctcctcccctcctctcccgccctctcatccctcatccc
tctattaacgtggcggtggtgttctgtggctctgcttaccagaatgaggtcaggggtcat
atgagcagagaggacttcgctgattttcccctagaggtgaacccggtcactgttctggtt
aacgacaccaaccctcgtgccctgctgacacgtctctgtgaaaccatggcgacagagaaa
ctgcatggggtcgtgttcgaggacgatgtgggatcgggagctggacctcaggtggcagaa
gtggctcagatcctagacttcctgtcgactcagacagctctgcccatcgttggcatcagc
ggaggatctaccgttgtcatacctcacaaggtaagacaacacataatactaccctcccgt
ataggttcaggttttgctgagggttccacgtttctccagatgggcgcctccctggagcag
cagatcgtctgcatgttcaagttgatggaggagtatgactggggagactttgtagtaatc
accagcatgtggccgggatacgagacgtttgtagactacgtccgatcctacacggacact
tcctacttcctgtggaggctacaagatatcctgtctctggagatgtctgtcggaaccagt
gacgtccgagccaaacgcatgttacagcagattgattcccaggtgctcctggcctactgt
tcctatgaagaggcccagtacctgttccaggtagcaggggaggtaggtctactggggcct
gggtacatctggatcctcccctccctcgcattgggcaacacagagagccctccacctatg
agcttccctgtaggactgattggcgtcatcactgaccactggaggaagagcctgaggcaa
cgtgtcagagagggagtggccatagtggctaaaggggcggatagtttcagaaggcatcaa
gggttccttccagagggacacagcgactgcaacacaccagttacacatatcaacaacaac
acactgttcagacacatgctaaacgtgacatgggagcgtaaggacctgtcgttcaacagt
gatggctacctgaccaatccctccatggccatcgtcgcactggacagagacagactttgg
gacaaggtactgaattacatgcggggtatcctccagggggcgttacccgtgtggcctcgc
tatggcagttttctggagacagtatcagatgaccgccacctgacggtagccactnctgag
gagaggcccttcgtcatcgtagaaaatgtggaccccacggcaacgctgcacgctgcagta
cgcaccacgtgccttccgcgccagtctaaccgaccgagaggtactattgtgggccactcg
gagccctacaccaagctgtgctgtaaggggttctgtatagacattctgaagaagctgtct
cgcaccattaagttctcctacgacctctacctggtcactaacgggaaacatggaaagatg
atcagtggcatctggaacggcatgatcggagaggtgttctataggaaagcagacatggcc
ataggttctctcaccataaatgaggagcgttctgagatcatcgacttctccgtgcccttc
gttgagacgggcatcagcgtcatggttgcccgtagcaatgggactgtctccccctccgcc
ttccttgagccctatagcccagcggtgtgggtgatgatgtttgtaatgtgcctgaccgtg
gtcgctgtgactgtattcgtgtttgagtacttcagtcctgtcgggtacaaccgaagcttg
gtcagtgctaaagcgcccggaggtcctaccttcaccntagggaagtcagtgtggctactg
tggggcatcgtgttcaataactcagtccccattgagaaccctaaaggcacaaccagtaag
atcatggtgttggtgtgggccttcttcgctgtcatcttcctggcctcctacactgccaac
ctggctgccttcatgatccaggagcagtacatagacactgtgtctggactgtctgacaag
aagttccagaagcctcaggagcactaccctccattccgttttggtacggtccctaacggc
agtacagagaggaacatcagaagtaactaccctgacatgcatgcacacatggtcaaatac
aaccagaaaggagtggaggatgccctcaacagcctcaagacagggaagctggatgcattc
atctatgatgctgcggtgttgaactacatggcggggaaggacgagggctgtaagcttgtg
actatcggctccgggaaagtgtttgccacgacaggctatggcatagccctgcagaaagat
tccagatggaaacgacccattgacctggccttgctgcagttcctgggagacggtgacacc
cagcgcttggagacggtctggctgtcaggcatctgtcagaatgagaagaacgaggtgatg
agtagtaagctggacatagacaacatggccggggtcttctacatgctgctggtggccatg
gggctcagtctcttggtgtttgcctgggaacatctactctactggaaactacgcaagaaa
ctagacaagtctcctcgcatggacttcctgctcgctatcagcaggggaatctacagttgc
ttcaacggggtggaggaaccagaccaccctaacctggcaaactcagatctgacaactaac
tacgcccaggcaaacatgcttaagatgttacgcaccgctaaagacctggtcaactctgcc
caggtcgagacctcactggaccacgccaccaagaccatagaacactggggtcgccatggc
ggcaacctgccagtccacattccgcagcaggtcaccacggaaatggttccaggagggttt
tctcatgtcacagagaacacacacacacacctgtcccccgagcaccccctcatcccgcaa
tactgcacgctgggtgtagtgacttctctgaacaggcagaaggggctggcgagacccacg
ccgctacgatacacgctcccggctcgcacttcctccctctacgacagaccactttctgtt
tctagtctcagtagccctcaccttgacctggctgggggggaccccctctcttcctactct
caaccctccacaggtaggctgtatgtggagccccagcacatctcccacccccgctctcct
ttcatcccctatagtgagctccagctcccagacatctacctctcctctcacccaccctct
gctgtctcccatcccccccacacagagccctccaagaggaagagaaagagcaagagcctc
ctctcaggggagacaggaagaggaggaggacagaggaggcggcgcagagaggagaagacg
gtgtgcctggctgaactccgggccaaccacctccaggaaaaccacgtctcgccccacatg
cctgactccctgtacccaggaaaggtgctctgtcctggggaagagggctgcggtggctcc
tggcctcttcctctggaggagctcgtcctagcaggcagacggcggctccaccgacggcca
tctttcctccgagccacctgggggagtgagcggattctccagccggacgaaactccgcct
acatcccttgattgccaatcacattctgctttaccagacctgttcccctgcgtcatggct
gaccaagaaactcccactaaactctacaaccccgcccccctccggaacaacctatgctac
cctgccacctcaactcgccagcatgcgtatctccatataaggcaggaccagaggaaaggg
aatggacgtaagaagctgcggtactcaaactccacccacctgcccacctacagggaggcc
atgctggggggtcagggaggcggagggggggtagaccttgggggggtccggagagccacc
aacctgctcagcagacagtactcccactatctaacctcctaccctgggctgcctctctac
catggccccctggacctccaggcccattcccaggtatccagcaaccatgccagccccagc
cccggtacataccctagtcccagcccagtatgccagctcctgccctgtggaggtggcttt
cgaggccagagggggttgctgtaccaggacagtctgtatggagcctatggggccaatgga
gcctaccgagaggaccaggatccgggcttagagccccagagaggagatgcatcagtaggt
ttgaggtctgaggacagatcctgtgtgacccagccctggggacgcgtgtctagtctggag
tcagaggtctga
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integrated database retrieval system
