Salvelinus sp. IW2-2015 (Arctic char): 111967949
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Entry
111967949 CDS
T05762
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03430
Mismatch repair
salp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111967949 (pms2)
03460 Fanconi anemia pathway
111967949 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111967949 (pms2)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
111967949 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
111967949
NCBI-ProteinID:
XP_023849178
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Position
LG8:complement(41199195..41209598)
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AA seq
892 aa
AA seq
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MTTLRDDVATGPYCSSEPAGTIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATN
VDIKLKDSGTELVEVSDNGKGVEEVNFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSS
LCALSDLSVVTCHEAAQVGTKLVFDHNGHLTQRSPHPRQQGTTVSLSQLFYTLPVRHKEF
QRNIKKEYTKMIHVLQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGKQSMRDNIGAIFGP
KQLQSLLLFQQLSPTDNIKEDYGLSNADLPKDLFTISGFVSRGDHGVGRSATDRQFFYIN
NRPCDPSKVSKVVNEVYHMFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLA
IMKSSLIAMYETGVNKISLNHMSYSTTSKHTLQDSYRPAEPPSDMEGCQVPSSEMAPEAG
DDSESVIPSPQPFLNLAGLKTAFSMHNSPGSGSKSSTTKAANTGPTQKKLQSFFGGSDKS
QNTHGPSLQSPLKSSRGAVKCSPVGRSVLEGFRYGRTPDSDVDSGRESVLSEHSSPTATP
ESLYATTGSEFNSPDITVDDEPIIKSEVLDEPFNEERTVAKHFDRPIEQRISETSVEMSF
SPNAKKAKLEDGQFSSEYKTTHSASSEGSSGSNVDAPVCVQKRAVPLQFSVQELFGRVRR
LQEQRREKAEDGLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITK
LNSDIFMIDQHATDEKYNFEMLQQHTALQGQRLIVPQNLHLTAVSENVLMENLEIFRKNG
FDFLIDEEAQVMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRQMFASR
ACRKSVMIGTALSTSEMKKLVVHMGEIEQPWNCPHGRPTMRHLVNLNIISED
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgactactctgagagatgacgtcgcaactggaccctattgcagctctgaaccagctgga
accatcaaggccattgacaggcactctgtgcatcagatctgctctggacaagttgtgttg
accctggctacagctgtcaaggaactggttgaaaacagtattgatgcaggggccaccaat
gttgacattaaattgaaggacagcggaacagagcttgtggaagtgtctgacaacggcaaa
ggagtggaagaggttaattttgaaggactaaccttgaagcaccacacatcgaagctgaag
gatttctctgaccttatccacgtggaaacatttggcttccgaggggaagccctcagctct
ctttgtgccctcagtgacctcagtgttgtgacctgtcatgaggctgcccaggtgggcacc
aagctggtgtttgaccacaacggtcacctgacccaacggtcaccccaccccaggcagcag
ggcaccacagtcagcctgtcgcagctcttctacaccctgcctgtccgacacaaggaattc
caacgcaacatcaaaaaggaatacaccaagatgattcacgtgctccagtcctactgcatc
gtctctacaggggttcgtatcacctgcaccaaccagacgggacagggcaaacgcaccccg
gtcctctgcaccagcggcaaacagagcatgagggacaacattggagccatatttggcccc
aaacagttgcagagtctgcttctattccagcagctctccccaacagacaacatcaaggag
gattatggactgagtaatgcagacctacccaaagacctcttcacaatctccggttttgtg
tcgcgaggggatcatggtgtcgggagaagtgccacagacagacagttcttttacatcaac
aaccgaccgtgtgatccttctaaggtctccaaggttgtgaatgaagtgtatcacatgttt
aacagacatcagtatccatttgttgcattgaacatcactgttgcctcagagtgtgtggat
gtgaatgtcactccagacaagcgtcagatcttcctccaggaggagaagctcctgctagcc
atcatgaaaagctctctcatcgccatgtacgagactggagtcaacaagatcagcctgaac
cacatgtcctactccaccaccagtaaacacactttacaagattcctacagaccagcagag
cctccatctgatatggaaggatgccaggttccatcatctgagatggctcctgaagctgga
gatgattcagaatctgttataccaagcccccagccttttctcaacttggctggattgaag
actgctttctccatgcacaacagcccaggcagtgggtccaagtcgagcactactaaagct
gctaacactggtccaacccagaagaaactgcagtctttcttcggaggctctgacaagagt
cagaacacacacgggccaagtttacaatctcctttgaaatccagtcgaggtgcagtgaaa
tgttcccctgtggggaggtctgtgctggaggggttcaggtatggaaggacgccggacagc
gacgtagactctggcagagagagcgtcctgtcagagcacagctcccccacagccacccca
gagagtctctatgctactacagggtcagagttcaactcaccagacatcacagtagatgac
gaacccattataaaaagcgaggtactcgatgaacccttcaatgaggaacgcacagttgct
aagcacttcgaccggccgattgaacaacgtatttcagagacgtctgtggagatgagcttc
agtcccaacgccaagaaggccaaactagaggatggtcagttctcctcggagtacaagacc
acacattcagccagttctgaaggatcctctgggtctaatgtggacgcaccagtctgtgta
cagaagagggcagtgccactgcagttctctgtacaggagctgtttgggagggtgagaagg
ctacaggaacagcgtagagagaaggctgaagacgggctgcgctacagacgcttcagagcc
aaaatcagccctggagagaatcagagtgctgaggatgagctgaagaaagagatatgcaaa
gacagttttaaggacatggagataatcggacagtttaacctgggcttcatcataactaag
ctcaactctgacatcttcatgatagaccagcacgccaccgacgagaagtacaacttcgag
atgcttcaacaacacactgcactgcaaggacagagactcattgttccacagaatctccac
ctcacagcagtcagcgagaacgttctcatggagaaccttgagatcttcagaaagaatggc
tttgatttcctcatagatgaagaggcccaggtgatggagcgggtgaagctggtgtccctg
ccaaccagtaagaactggacatttggtccgggggacatcgaggagctcatcttcatgttg
agtgacagcccaggggtcatgtgtcgaccgtctcgtgtcaggcagatgttcgcctccagg
gcctgcaggaagtcggtgatgatcggtactgctctgagcaccagtgagatgaagaagctt
gtggttcatatgggggagatagagcagccttggaactgtccacatggcagacccactatg
agacaccttgtaaacttgaacatcatctcagaagactga
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