Salvelinus sp. IW2-2015 (Arctic char): 111968060
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Entry
111968060 CDS
T05762
Symbol
msh6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111968060 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salp03400
]
111968060 (msh6)
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111968060 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
111968060
NCBI-ProteinID:
XP_023849358
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All DBs
Position
LG8:47784021..47813720
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AA seq
1381 aa
AA seq
DB search
MAKQSSIFNFFNKSPPPVLKAKPSPSPAEADLPSSVRKKNSSPKEEAKHASQTPTTKKTP
AKASKGEFGKLFGNKTPTVKESPAPCPFSAGALVWAKLEGHPWWPCMVVPQPVGGQQMRG
RGKSQRLHVHFFDEPPTRGWVSTKKIHEYQGSDTRDAKTGGVFFSGNPVIRRAKELADAV
MSDSPETRLKMPVCMDPSDAEEDEEEDMELDKSTLTDEDLTEEEDEETVKSKPSRCSSRA
TAEQSSKSKRRRIVVACDSEGSGDEFKPEQAACSSEEDEEEVVNSASEEDVESECETEPD
SPVKPVKRKRPAEKPSSAKPKPKTPTLPETAKRAPLSSTITADTKSRLSGFSAPESFDSQ
TNGSGAGGQGGATVWDHEKIDWLQEGRRKDAKRRRQSEEDYDPTTLYVPEDFLNKTTPGM
RRWWQLKSETFDAVLFFKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEIGFGRFS
DGLVQRGYKVARVEQTETPDMMEARCKTMLKPTKFDRVVQREVCRIITRGTQTYSVLDGA
PSETHSKYLLSIKEKAEEESSGHCRTYGVSFVDTSVGYFHVGQFQDDRHCSRLRTLLSHY
APAQVLFEKGNPSAETRKIFKASLSSAMQEGLTAGSQFWDAQKTLKTLAEEDYFKESVRK
DEESGSSVLPSVLKSMTSESDSLGLTPKEGYELALSALGGCMFYLKKCLVDQELLSMTNF
QEYIPVDVEMEKAAGPTSFFSQTRQRMVLDGVTLANLEILQNVSGGTEGTLLERLDTCST
PFGKRLLKQWLCSPLCNPTSIGERLDALDDLMGVQAQATEVSDLLKKLPDLERLLSKIHS
IGTPKGPDHPDSRAVLYEEVTYSKKKIADFLSALEGFKTMQEIVTILGPVAVDFRSRLLR
QVVNLKDDGQEGLFPDLSAELKRWDTAFDHQKARATGVITPKAGFDPEFDQALSGIKACE
RDLQDYLDRQKKRLGCRNLTYWGTGRNRFQMEVPDSVSERNIPEEYKVKSTKKGWKRYWT
REIERLFSELQSLEEKRDAALKDCMRRLFYNFDKNYRDWQTGVECMAVLDVLLSLTRYSQ
GGDGGPMARPQVLIPGDISQSAAFLDLRGSRHPCVTKTFFGDDFIPNDIAIGCPGGEEEG
QEDKGHAPCVLVTGPNMGGKSTLMRQCGLVVVLAQLGCYVPAESLSFTPVDRVFTRLGAS
DRIMAGESTFFVELSETASILHHGTKHSLVLLDELGRGTATYDGTAIASAVVNELAERIC
CRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENEGDEDPSQETITFLYKFIAGACPKSXG
FNAARLANLPEDVIQSGHRKAKEFERSTISLRVFKKLCLYAEDPTAASTQFALLVQMISN
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagcagcattttcaattttttcaataagtctccgccaccagttctgaag
gcgaaaccgagtccctcgcctgcagaagccgacttgccatcctcagttcgaaaaaagaac
agctctccaaaagaagaagctaagcatgcatctcaaactcccaccaccaaaaagactcct
gcaaaagcgagcaaaggcgaattcggcaaactctttgggaataagacaccaacagtaaag
gaaagtccagcaccatgtccattcagtgccggagccttggtgtgggccaagctagagggg
cacccctggtggccgtgtatggtagttccccagcctgtcggcgggcagcagatgaggggc
aggggtaaaagccagcgcctgcatgtccacttcttcgacgagccaccgaccaggggctgg
gtcagcaccaaaaaaatccacgagtatcaaggctcggacaccagagatgctaaaacagga
ggggtgttcttcagtggtaaycctgtgatccgcagggccaaggagctggctgatgctgtt
atgtcagacagcccagagaccagactgaagatgcctgtctgtatggacccatctgatgct
gaggaagacgaggaggaggatatggagcttgataagtcaacattgaccgacgaagatttg
actgaagaggaagatgaggagacagtgaagtcaaagcctagtcgctgttcctcccgtgcc
acagcagaacagagcagcaagtccaagcgtcgccgcatcgttgtcgcctgcgacagtgaa
ggctcgggtgacgaattcaaaccagaacaggccgcatgcagcagtgaggaagatgaggaa
gaggtagtgaacagtgcatcggaggaagatgtagaaagtgaatgtgagactgaacccgac
agcccagttaaaccagtgaaacgcaaacgacccgcagagaagccatccagtgccaaacca
aaacccaagactcccactcttccagaaaccgccaagagagcccccttatctagcaccatc
acagccgacaccaagtctcgactctcaggcttttcggccccggagagcttcgacagccag
acgaatggctcaggtgccggcgggcaaggtggggctacggtatgggaccatgagaagatt
gattggctacaggaaggccggaggaaagacgccaagagacggagacagtctgaggaagac
tacgaccccacgactctgtatgtcccagaagacttcttgaacaaaacgaccccaggcatg
cggcgctggtggcagctcaagtcggagacgttcgatgccgtactcttcttcaaggtgggt
aagttctatgagctgtaccacatggatgctgtgattggtgtcaacgagctgggtctgacc
ttcatgaagggggcctgggcccactctggcttccccgagataggctttggacgcttctca
gacggactggtgcagaggggatacaaggtggcacgtgtggagcagacggagactccagac
atgatggaggctcgctgtaagaccatgctgaagcccaccaagtttgaccgggtggtacag
cgmgaggtgtgccgaatcatcacacggggaacgcagacctacagcgtgttggacggagcc
ccttctgagacacacagcaaatacctcctcagcatcaaggagaaggcagaggaggagagt
tcagggcactgcaggacctatggggtcagcttcgtggacacatctgtagggtacttccat
gtgggccaattccaggatgaccgacactgctcccggctccgcaccctgttgtctcactac
gcccctgcacaggtgctctttgagaaggggaacccttcagccgaaacccgtaaaatcttc
aaggcttctttgtcctcggctatgcaggaggggctgactgcaggctcccagttctgggat
gcacagaagaccctgaagaccctagctgaagaagactactttaaggagagtgtgaggaag
gatgaggagtctgggagcagtgttctcccctctgtcctcaaatccatgacgtctgagagc
gattcgttgggtctgacccctaaggaggggtatgagttggccctgtcggccctgggaggc
tgtatgttctacctaaagaaatgtctggtagaccaggagctgctgtccatgaccaacttc
caggaatatatcccagtggacgtggagatggagaaggcagccgggccgaccagtttcttc
tcccagacccgtcagcgtatggtcctggatggggtgaccctagccaacctagagatcctg
cagaatgtgtcggggggtacagaggggaccttgttggaacgcctggatacctgtagtact
ccatttggtaaaaggttgctgaagcagtggctctgttccccgctctgtaaccccacatcc
ataggggaacgtcttgatgccctggatgacctgatgggagtgcaggcccaggctacggag
gtctcagacctgctcaagaagctccctgatctggagaggctccttagtaagatccacagc
atcggtactccgaagggcccggaccacccggacagcagggctgttctgtatgaagaggtc
acctacagtaagaaaaagattgcggacttcctctctgctctggagggcttcaagaccatg
caggaaattgtgaccatactaggaccggtcgcggtcgacttccggtccaggctgctgcgc
caggtggtcaacctgaaggatgacggtcaggagggcctcttccctgacctgtcggccgag
ctgaaacgctgggacacagccttcgaccaccagaaggcccgcgccaccggagtcatcacc
cctaaggctggctttgacccagagtttgaccaggctctcagtggcatcaaggcctgtgag
agggacctacaggactacctggacaggcagaagaagaggctgggctgcaggaacctgacc
tactgggggacgggacggaaccgctttcagatggaagtaccagacagtgtctcggagagg
aacattcctgaggagtacaaggtgaagtccactaagaagggctggaaacgctactggacc
agggagatagagcgtctgttctcagagctccagagtcttgaggagaagagagacgcagct
ctgaaggactgcatgagaagactcttctacaactttgacaagaactacagggactggcag
actggggtggagtgcatggctgtgctagatgtgttactgagtctgacacggtacagccag
ggaggagatggaggaccaatggcacggcctcaagtactaattcctggtgacatcagccaa
tcagcagccttcctggacctgaggggctcccgccacccctgtgtcaccaaaaccttcttc
ggtgatgacttcatccctaatgacattgctattggctgccctggcggcgaggaggagggc
caggaggataaaggacatgcaccctgcgtgctggtcactgggcctaacatgggaggaaag
tcgactcttatgagacagtgtggtctggtggtggtcttggcccagttgggttgctatgtt
cctgctgagagcctgtcctttacccctgtggacagagtcttcacacgcttgggagcatcg
gaccgtatcatggctggggagagcaccttctttgtagagctcagtgagacagctagtatc
ctacaccatgggaccaagcactccctggtgctgctggatgaactgggaaggggcacagcc
acatatgacggcacagcgatagccagtgctgtggtgaacgagctggcggaaaggatatgc
tgtcggaccctcttctccacacattaccactccttagtagaagactacaccaacaaccct
gctgtacggctcggacacatggcctgtatggtggagaatgagggagatgaggaccctagt
caggagaccatcaccttcctctacaagtttatcgcgggagcatgtcctaaaagctarggt
ttcaacgctgctcgcctcgccaacctgcctgaggatgttattcaatcaggccacaggaag
gccaaggagtttgagaggagcaccatttccctacgagtcttcaagaagctgtgcttgtat
gctgaagaccccacagcagccagcacacagtttgccttgctcgtccagatgatcagcaac
ctgtga
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