Salvelinus sp. IW2-2015 (Arctic char): 111968123
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Entry
111968123 CDS
T05762
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salp03009
]
111968123
03036 Chromosome and associated proteins [BR:
salp03036
]
111968123
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111968123
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111968123
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111968123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Gly_acyl_tr_C
Motif
Other DBs
NCBI-GeneID:
111968123
NCBI-ProteinID:
XP_023849449
LinkDB
All DBs
Position
LG8:52530496..52538039
Genome browser
AA seq
771 aa
AA seq
DB search
MPSKILXENEDIGMEGEMDISAGSTTPKKIKEKKTKEGKKIKKQKTVVEEEPDCEPPAPK
KKKKKKKEKEDATNGGAEVDVNGNTQDDVNGNAQESPLKDNTSHSNEESADNDKATEKKK
KKKKKEKKTDEKVIVNGVFPETPKLIAQTNGHTAATTPAQSSEDSESGVETETQEQKEGA
FSNFRISPNTIKLLEARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK
LQNDPDDKKRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRS
GIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFADQVEEILSASYQKDSET
NPQTLLFSATCPSWVYDVAKRYMRPNYEHVDLIGKKTQKTATTVEHLAIACHWSQRAAVI
GDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGT
FEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEED
QLRYVEEKACITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGA
VEALSAALAHISGATALEQRSLLNSDTGYTTMTMNSSQELQNIGCAWRGLKEQLGEEIDN
MIRGMTFLKGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKPRMGGDRGYG
RSFGGQGGDRGYGRSFGGQGGGRGFRNGGGGGGNWRGGGSHKRSFSSAFDY
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaagattcttttwgaaaacgaagacatcggaatggaaggtgaaatggacatt
agtgcgggcagtacgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttgttgaagaggaacctgactgtgaacctcctgctcccaag
aagaagaagaagaagaagaaggaaaaggaggacgcaactaacgggggcgcagaagttgat
gttaacggcaacacacaagatgatgttaacggcaacgcacaagaatcacctttgaaggac
aacacatctcattccaatgaggagtctgcagacaatgacaaagcaaccgagaagaagaag
aagaagaagaaaaaggaaaaaaagacagatgaaaaagtcatcgtcaacggagtgtttcct
gagactcccaagctgattgcacaaactaatgggcataccgcggcgacaactccagcacaa
tcaagcgaggactccgaaagtggagtagaaaccgagacacaagaacagaaagagggagcc
ttctctaacttcagaatctcccccaacaccattaaactacttgaagcaagaggcatatct
tacctctttgacatccaaacacaaaccttcaattctgtgtacgagggaaaggatgtgatt
ggccaggcaagaacaggcactgggaaaactttagcttttgccattccgctgatcgagaaa
ctccaaaatgacccagatgacaagaagaggggcagagccccaaagattttgtgccttgct
ccaaccagagaattggctattcaagtatccaaggatttcaaggacatgacaaagaaactg
tctgttacatgtttctatggtgggagctcctacaacccccaacttgatgcgatccgcagt
ggcatcgatatcctagtgggaactccaggtcgtatcaaggaccatctacagaataacaaa
ctggacctgtctcaattgaagcacgttgtattagatgaagtggaccaaatgcttgatatg
ggctttgcagaccaggtggaggagatactgtcggcatcttaccaaaaagactctgagacc
aacccccagaccctgctcttctctgccacatgcccatcatgggtgtatgatgtggcaaag
aggtacatgaggccaaactatgagcatgtggacctcattggcaaaaagacccagaaaact
gccaccacagtagagcaccttgctatagcgtgtcactggtcccagagggctgcagtcatt
ggggatgtggtgcaggtttacagcgggagccacggccgcaccatcgttttctgtgagacc
aagaaggatgccaacgagctgtcaatgaatgcctccataaagcagagttcccagtcactt
catggggacattcctcagaagcagagggagatcacactgaagggcttcagaagtggcacc
ttcgaggtcttagtggccaccaacgttgctgcccgcgggttggacatcccagaggtagac
ctggtcgtgcagtgctcacccccaaaggatgtggagtcctacattcaccggtcaggtcga
actggtcgggctggcaggactggcgtctgcatctgtttctaccaacgcaaagaagaagac
cagctccgatatgtagaggagaaagcatgcattacatttaagcgggttggagtgcccact
gccaatgacatcatcaaatcgtccagtaaagacgcagtgaggtttttagactctgtgcct
ccccaagccattgaatatttccgcgtgtctgctaccaagctgattgaggagcgtggggcc
gtggaggccctgtctgccgccctggcacacatatcaggagccactgccttggagcagagg
tccctcctcaactctgacactggctacaccacaatgacaatgaacagctcccaggagctg
caaaacattggctgtgcctggcgtggtctgaaggagcagctgggagaggagattgacaac
atgatccgggggatgaccttcctcaagggcaaaatgggagtctgttttgatgttccggct
gacaaggtaaaggagtaccaggatgcctggcaggacggtagacgttggcagctgtcaatc
gccacagagcttcctgagctggaggagaaaccgcgcatgggtggtgaccgtggatatgga
cgttccttcggaggacagggaggtgaccgtggatatggacgttccttcggaggacaggga
ggtggccgtggcttcagaaacggcggaggcggcggcggcaactggagaggtggaggcagt
cataaacgcagcttcagcagtgcgtttgattattaa
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