Salvelinus sp. IW2-2015 (Arctic char): 111968172
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Entry
111968172 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: vinculin-like
KO
K05700
vinculin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04520
Adherens junction
salp04810
Regulation of actin cytoskeleton
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111968172
04520 Adherens junction
111968172
09142 Cell motility
04820 Cytoskeleton in muscle cells
111968172
04810 Regulation of actin cytoskeleton
111968172
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
salp04812
]
111968172
04147 Exosome [BR:
salp04147
]
111968172
Cytoskeleton proteins [BR:
salp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
111968172
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111968172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Mob_Pre
Talin_R4
Motif
Other DBs
NCBI-GeneID:
111968172
NCBI-ProteinID:
XP_023849512
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Position
LG8:54195511..54261118
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AA seq
1066 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKD
TVQTTEDHIMKRDMPPAFIKVETACTKLVQAGVHVESRPLLRPARDYLIDGSRGIPLGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLITYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVKSMNTVKELLPVLISGIKIFVTTKTSGSQGVEESLKNRNFTFEKMSAE
INEIIRVLQLTSWDEDAWANKDTEAMKRALALIDSKMTQAKSWLRDPDAQPGDAGEQAIR
QILDEAGKVGELCAGRERRDILGTAKTLGQITDQVSEMRARGQGASPAAKQKAQQVSQGL
DVLAGKVENAGRKLEAMTNSKQVIAKRIDAAQNWLADPNGGPEGEENIRALLSEAKKIAD
MCEDPKERDDVLRSIGEMAALTAKLSELRRQGKGDTPEARALAKHIATALQNLQSKTSKA
VANSRPAKAAVHLEGKIEQAQSWMENPTIDDGGVGQAAIRGLVAEGRRLANALPGPYRQE
LVGKCXQVEQLMAQLADLAARGDGESPQARAVAQQLQEGLKNLKGTMQEAMTQEVSDIFS
DTTTPIKLLAVAATAPPNAPNRDQVFDERAANFENHANKLAATAEKAAAVGTANKSTVEG
IQAAVKSTREITPQVVSAARIMLRNPGNQAAMEHFETMNNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLEKCRAAMANHQPQMLVVGATSIARRANRILLVAKREVENSEDPRFR
EIVKAASDELSRTISPMVMDAKAVAGNITDPSLQKGFLDSGHRILGAVAKVRDAFQPQEP
DFPPPPPDLDQLHVSDEPAPPKPPLPEGEVPPPRPPPPEEKDEDFPEQEVGEMVSEPMMM
AARQLHEEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGAGGNKRALIQCAKDIAKASDE
VTKXAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQAT
EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLHWIRKTPWYQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccggtttttcacacaaagacgatagaaagtatcctagagccggtggctcagcagata
tcccatctggtgataatgcacgaagaaggtgaggtggacgggaaagctatcccggatctc
acggctcccgtggctgccgtgcaggcagctgtcagcaacctggttcgggtggggaaagac
actgtccagaccacagaagaccacataatgaagagagacatgcctccagctttcatcaag
gtggagactgcatgcaccaagctggtgcaggctggcgtccatgttgaaagcagaccctta
ctccgtcctgctcgagattacctcatcgacggctcccgtgggatccctcttggcacctct
gacttgctgctcaccttcgacgaggctgaggttcgtaaaatcatccgtgtgtgtaaaggt
atcctggagtacctgaccgtggcagaggtggtggaatccatggaggatctgatcacgtac
acaaagaacctgggacctgggatgacgaagatggccaagatgattgacgagaggcagcag
gagctgacccatcaagaacaccgcgtgatgctkgtcaagtctatgaacacggtcaaagag
ttgctacctgttctaatctcaggtatcaagatctttgtgaccaccaagacatctggcagc
caaggagtagaggagtctctgaagaacaggaacttcaccttcgagaagatgagcgctgag
atcaacgagatcatcagggtgctgcagctcacttcctgggacgaagacgcctgggccaat
aaggatacagaggccatgaagagagctctggcgctcatcgactctaagatgacccaggcc
aagagctggctgagggaccccgacgcccaaccaggggacgcaggagaacaggccatccgt
cagatcctggatgaggctgggaaggtgggagagctgtgtgctgggagggagcggagggat
atcctgggcactgccaaaaccctggggcagatcactgaccaggtgtctgagatgagggcc
aggggtcagggggcatctcctgcagccaagcagaaggcccagcaggtctcccagggcctg
gatgttctcgcggggaaagtggagaatgcaggccggaaactggaggccatgaccaactcc
aaacaggtcatcgccaagaggattgacgctgctcagaactggctggcagaccctaacggt
ggtcctgagggagaggaaaacattagagccctcctgtctgaggccaagaagatcgctgac
atgtgtgaagaccccaaggagagagatgacgtcctgaggtccatcggagagatggctgct
ctcaccgccaagctctctgaactccggagacagggtaaaggtgatactccggaggccagg
gcattggcgaagcatatagccacagccctacagaacctgcagtctaagaccagcaaggct
gtagccaacagcaggcctgccaaggctgctgtccacctggaggggaagatagagcaggcc
cagagctggatggagaaccccaccatcgatgacgggggagtgggccaggcagctatccgg
gggctggtggcggagggccgtcgtctggctaacgctctgccaggtccctacagacaggag
ctggtagggaagtgtgascaggtggaacagctgatggcccagctagccgacctggccgcc
aggggtgatggagagtccccacaggcgcgtgctgtggctcaacagctccaggagggcctg
aaaaacctcaaaggaacgatgcaggaggcgatgacacaggaggtgtcagacatctttagc
gacacgaccactcccatcaaactgctggctgtggccgccaccgccccacccaatgccccc
aacagggaccaggtgtttgacgagagggcggccaactttgagaaccatgccaacaagctg
gctgccacggcagaaaaggctgctgctgtggggacagcgaacaagagcactgtygagggg
atccaagctgctgtcaaatctacaagagaratcacaccacaggtggtctctgctgcccgt
atcatgctgagaaacccaggcaaccaggctgcgatggagcactttgagaccatgaacaac
cagtggattgacaacgtggagaaaatgacaggtttggtggacgaggctatagacaccaag
tctctgttggatgcctctgaggaggccattaagaaggacctggagaaatgtcgcgctgcc
atggctaaccaccagccccagatgttagtggtaggggccaccagcatcgcccgacgggcc
aaccgcatcctcctggtggccaaacgggaggtggagaactctgaggatcctagattcagg
gagatcgtgaaggctgcgtctgatgagctgagccggaccatatctcccatggtcatggac
gccaaggctgtggctgggaacatcaccgatccaagtctgcagaagggcttcctggattca
ggccataggatcctgggggccgttgccaaggtgagagatgcgttccagccacaggaacca
gacttccccccaccacctcctgatctggaccagctgcacgtcagcgacgagcccgcccca
ccaaaaccycctctccccgagggtgaggttcctccccccagaccccctcccccagaggag
aaggacgaggacttcccagagcaagaggtgggagagatggtgagcgagcccatgatgatg
gccgccagacagctccacgaggaggcrcgcaagtggtccagcaagggtaacgacatcatc
ggtgcagccaagagaatggccctgctcatggctgagatgtcccgtctggtgcgcggtgcc
ggtgggaacaagcgtgccctcattcagtgtgccaaagacatcgcaaaagcctcagacgag
gtcacaaagrtggccaaggaggtggccaagcagtgcacagacaaacgcatccggaccaac
ctcctccaggtgtgtgagcgcatcccgaccatcagcacacagctgaagatcctgtccaca
gtcaaggccaccatgttgggtcgtaccaacatcagcgaggaggagtccgagcaggccaca
gagatgttggttcacaatgcccagaacctgatgcagtctgtgaaggagacggttagggag
gccgaggctgcctccatcaagatccggacggatgccgggttcaccctgcactggatccgt
aagaccccctggtaccagtaa
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