Salvelinus sp. IW2-2015 (Arctic char): 111969291
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Entry
111969291 CDS
T05762
Symbol
exosc1
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111969291 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111969291 (exosc1)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111969291 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111969291 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
SPK
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
111969291
NCBI-ProteinID:
XP_023851094
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All DBs
Position
LG10:complement(12015808..12021501)
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AA seq
223 aa
AA seq
DB search
MADKPFRQRHELRSHPIGLRSALLENMSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYS
SLAGYVLRKNEGEELPVISVVRETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPL
KDRFRGTIRKEDVRATEKDRVETYKSFRPGDIVLAKVISLGDVQSNYLLTTAENEXGVVV
AHSEAGAQMVPDGAISWCEMQCPRTHAKSSARXAQVQPEYLQA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaacctttccgtcaaagacatgagctcaggtcacatccaatcggcttgcgt
tctgctcttcttgaaaacatgtcgcccatgaagctgtgtgttccaggtgatagactatgc
agcacagaagactgtatgcccggtactggggtgtacctacgacacggctacatctactcc
tcgctagcaggctacgtactcaggaagaacgaaggagaggagctaccagtcatctcggtg
gtgagagaaaccgaggctcagctactaccagatgtaggagccatagtcacctgtaaggtg
accagtatcaaccccaggtttgccaaggtccacatcctctacgttggttccacaccactg
aaggaccgttttagaggaaccatcaggaaagaagatgtacgagcaacagaaaaagacagg
gtggagacgtataaaagcttccgtcctggagacatcgtcctggctaaagtcatctccctg
ggagacgtccagtccaactacttgttgaccacagcagagaacgagnctggggtggtggta
gcccacagcgaagcaggagcccagatggtcccagatggtgctatcagctggtgtgagatg
cagtgcccgcggacgcacgccaagagttccgcaaggnntgcccaggtgcaacctgagtac
ctgcaggcctga
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