Salvelinus sp. IW2-2015 (Arctic char): 111969898
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Entry
111969898 CDS
T05762
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
111969898
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
salp04515
]
111969898
Cell adhesion molecules [BR:
salp04515
]
Cadherins
Major cadherins
111969898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Fibulin_C
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
111969898
NCBI-ProteinID:
XP_023852044
LinkDB
All DBs
Position
LG11:16287793..16524546
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AA seq
926 aa
AA seq
DB search
MNLGSVLILTCTLLVDTSWATKADQPPKPPCRPGFSESFYTVFVSRDLLRGQSILKDTTL
SSERVKFDDCQHSKAVDFESSDPNFSVRPDGSVYAEQEVANLSEPVQFMVTARGGHDPHI
WETTVKLALAGHPPSVPVSQIGVEDMIARAWDSNPRVIKFPRKHQRSSSANGLRRQKRDW
VIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFV
TRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSK
PGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTVAAGLDREK
VSQYSIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENRVNVVVA
NLTVIDRDQPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLT
VIVSNKAPLASGIQSSLQSSAGVTISVQDVNEPPVFPSNPKSIRFEEGVPAGTTLTVFAA
QDPDLFIHQTVRYSKLSDPANWLRINRTNGQITTMAVLDRESMYVRNNIYEATFLAADNG
SPPASGTGTLQIHLIDVNDNAPVLLPKEAQVCERASPRSRVNITASDADADPHVGPFVFE
LPSYPPSVRRNWTASRISGDYAQLRLRIPYLDAGVYDVPIIVSDSGNPPLSNRSMIKVKV
CPCDDNGDCTTTGAVAAAGLGTGAIIAILICIIILLTMVLVFVMWMKRREKERQAKPLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPEALDHIICKPTGVRRVDERPVIAESQY
PVRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGD
QDYDYLNDWGPRFKKLADLYGGGDDD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggctccgttcttatactgacgtgcaccttacttgtggacacatcttgggcg
accaaggcagaccaaccacctaaacccccatgcagaccaggcttttccgagagcttctac
acagtgtttgtctctagagatctactgcgaggccagagcattctcaaagacaccaccctg
tcgagtgaacgtgtgaagtttgatgactgtcagcacagcaaggctgtggacttcgagagc
agtgaccctaacttcagtgtgcgtcctgacggctcggtgtacgcggagcaggaggtggcc
aacctgtctgaaccagtccagttcatggtgaccgcccgcggaggtcatgaccctcacatc
tgggagaccacggtcaagctggccttggctggccacccgccttctgttcctgtgagtcag
attggagtggaggatatgattgcaagggcctgggactctaatcccagggttatcaagttt
ccacggaaacatcaaagaagctcttctgccaatggtctgagacgacagaagcgagactgg
gtcatcccaccaatcaatgtgcccgaaaactctagaggacccttcccacaaatgcttgtc
agaatccgctcggaccaggacctggagaaagggatccgctacagcatcactggagcaggg
gcggaccagcctcccattgacgtgtacaacatcgaccctgtgcacggcaagatgtttgtc
accagacccctggacagagaggagagggcctcctaccatctgcgggcccatgctgtggac
atgaacgggaacaaggtggaaagccccatagacctgtacatctacgtcatcgacatgaat
gacaaccggccagagttccaaaaccaggtctacaacggctctgtggctgaaggctctaaa
ccaggcacgttagtgatgcaggtgaccgccaacgactcagatgacgacaccacagccaat
gggatggtgcggtaccggatcctatcccagaccccccacatgccaatccccaatatgttc
accatcaacagcgagacgggagacatcttcacggtggccgccggcttggacagggagaaa
gtgtcccagtacagcatcatcgtccaggccacggacatggaggggaacctgaactttggc
ctgtccaacacggccaccgccctcatctctgtgaccgacatcaacgacaaccctcccgag
ctgaccgccaggacgttttcgggggaggtcccagagaacagggtgaatgtggtggtggcc
aatctgacagtgattgacagggatcagcctcacagccccaactgggctgcccagtaccgc
atcgccagcggagacccccagggtcacttcctcatccgcaccaaccctgtcaacaatgac
ggcatggtcactgtggtcaagccagtggactatgagcagaacagggccttcatgctgacg
gtgatagtctctaacaaagcccctctggccagtgggatccagtcttctctccagtcttca
gcgggggtcaccatctccgtacaggatgtcaacgaaccccctgtcttcccttccaacccc
aagtccatccgtttcgaggagggtgtccctgcaggcaccacactcaccgtgtttgctgcc
caagaccctgacctcttcatccatcagactgtccggtactcgaagctgtctgacccagct
aactggctgaggatcaacaggaccaacggtcagatcaccaccatggccgtgctggacagg
gagtccatgtacgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggc
tctcccccagccagtgggacaggtactctacagatacatctgatagatgtgaatgacaac
gctccagtgctgttgcccaaggaggcccaggtgtgtgaacgggccagcccccgctccagg
gtcaacatcacagcctccgacgccgacgctgaccctcacgtggggccttttgtgttcgag
ctgccctcctaccctcctagcgtccgacgcaactggaccgcctcccgcataagcggtgac
tatgcccagctgagactgaggattccctacctggatgcaggggtgtatgatgttcccatc
atagtgtcggactctgggaacccgcccctctctaacaggtctatgataaaggtcaaggtg
tgtccgtgtgacgacaacggagactgtactaccaccggagctgtagctgccgctggactg
gggaccggagcgatcatagccatactcatctgtatcatcatactgcttacaatggtactg
gtgtttgtgatgtggatgaagcggagggagaaggagcgtcaggccaagcccctgctgatt
gacccagaggacgacgtcagagacaacatcctgaaatacgatgaggagggaggaggagag
gaggaccaggactatgacctaagccagctgcagcagcccgaggctctggaccacatcatc
tgtaaaccaacgggggtgcgcagagtggacgagaggcctgtcatcgctgagtcccagtac
cccgtcagacccagcctgcctcatcccggagatattggagacttcatcaacgacggtctg
agggcagcagacaacgaccccacagctccgccctatgactccctgctggtgtttgactac
gagggcagcggctccacggccggctccgtcagctccctcaactcctcaagctcaggggac
caggactacgactacctcaacgactggggcccccgcttcaagaagctggctgacctctac
ggcggaggagacgacgactga
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