Salvelinus sp. IW2-2015 (Arctic char): 111970766
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Entry
111970766 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111970766
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111970766
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111970766
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111970766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
111970766
NCBI-ProteinID:
XP_023853294
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All DBs
Position
LG11:49499658..49563078
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AA seq
1362 aa
AA seq
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MFSFVDSRTVLLLVATQVILLAVVKCQEEDRAPGAKGQKGEPGDITDVVGPRGPGGPMGP
SGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGGNFAAQMAGGF
DEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAGPLGPRGPPGP
SGXPGDDGDAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGLKGEGGAAGS
KGESGAPGENGAPGPMGPRGLPGERGRXGPSGAAGARGNDGLPGLLVPVGPVGPSGAPGF
PGSPGSKGEAGPTGARGPEGAQGSRGESGTPGSPGPAGASGNPGTDGIGGAKGSAGAPGI
AGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAGPQGALGPAGE
EGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGGVSGPKGAGGD
PGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSSGEDGRPGPPGPMGARGQPGVMGFPGP
KGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPGPSGFQGL
PGPRPWGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEGASGKDGSR
GLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAGPPGSDGQP
GVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVFGPKGARGAQGPSGATGFPGAAGRV
GPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPSGRQGDAGLRGAAGSPGEKGDAGEDGPS
GPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRGPPGPVGPP
GLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGASGANGAPGPVGPTGKQ
GDRGEAGAKDQLGPAGPAGARXMAGPQGPRGDKAXGGEGGERGQKGHRRFTGLQGLPGPP
GQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETGPSGPPGNS
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDATLKSLNNQ
IENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNMETGESCVY
PKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTFLRLLSTEA
SQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDGCTKHTGAW
GKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcattcta
ttagccgttgtcaaatgtcaggaagaagaccgggccccgggagctaagggtcagaagggg
gaaccaggagatatcacagatgtcgtaggaccaagaggacctggaggccctatgggcccc
tcaggagagcagggaccacgcggagacagaggagacaaaggcgataagggcagtcccggg
ccccgtggcagagatggcgagcctggtacccctggtaaccccggcccacccggaccctca
ggacctaacggacctcccggccttggaggaaactttgctgctcagatggctggaggattt
gacgagaaggctggcggagcacagatgggcgtgatgcaaggaccaatgggccctatgggt
cctcgagggccacctggcccctctggagctcctggcccacaaggtttccaaggcaacccc
ggagaggctggagagcccggatcagctggcccgttgggtccccgtggtccacctggaccc
tctggtnaaccgggagatgacggtgacgctggcaaacccggcaaaggtggtgatcgtgga
ccttctggtcctcagggagctcgtggrttcccaggaactcctggtctgcctggaatcaaa
gggcatagaggttatccaggtcttgatggactcaagggagagggtggagctgctggttct
aagggagagtctggtgcgcccggtgagaatggcgctcccggacccatgggaccacgtggt
ctgcccggtgagagaggtcgcnccggtccctctggagctgctggtgctcgtggtaatgac
ggtctgcccggcctgctggtccctgtagggccagttggtccatctggtgctccaggcttc
cccggctctccaggttctaagggagaagctggccccaccggtgctcgtggacctgagggc
gcccagggatcacgtggagagtcaggaacccccggatctcccggacccgccggcgcttct
ggtaaccctggaactgatggtattggtggagctaaaggatcagctggtgctcctggtata
gctggtgcgcctggcttccccggaccccgtggccctccaggaccccagggagccactggg
cctctcggaccaaagggaacatctggtgaccccggtatcccaggtttcaagggtgaggct
ggacccaagggagagattggacccgcgggtccccaaggagcccttggccctgcaggagag
gaggggaagaggggacccagaggagagcccggcgctgctggacctctcggacctcctgga
gagagaggcgcccccggtaaccgtggtttcccaggtcaggatggtctggctggtcccaag
ggagcccctggcgagcgtggagtcggaggcgtgtctggccccaagggagccggcggtgac
cctggtcgccctggcgagcccggtcttcctggtgcaagaggtcttactggtcgtcccggt
gatgcaggtcctcaaggaaaagttggacccggtggttcttctggtgaggacggtcgcccc
ggacctcctggccctatgggagcccgcggtcagccgggcgtgatgggattccccggaccc
aagggagccaacggcgaacctggcaagggcggagagaaaggattgctcggtgcgccaggt
ctgagaggtcttcctggtaaggatggtgagaccggagctgctggaccccctggccctgct
ggccctgctggagagagaggagagcaaggacaacctggaccttctggcttccagggtctg
cccggaccccgcccctggggcgcgatcggaccaggtggtgcatcgggtgcccagggaccc
cccggtctgcaaggtatgcccggagagagaggagcctcaggcatccccggacctaaggga
gacagaggtgacaacggagagaagggacctgagggtgcttctggcaaagacggttcaaga
ggtttgactggtccaattggtcctcctggcccagctggtcccaatggagagaagggtgaa
tctggtccctctggaccttccggtgctgctggtgcccgaggtgctcctggtgacaggggt
gagactggacctcccgggcctgctggcttcgctgggcctcctggatctgatggtcagccc
ggagtcaagggagagcagggagagggtggacagaagggagacgctggtgcacctggacca
cagggaccctccggagctcctggaccttccggacctactggcgtttttggaccaaaaggt
gctcgcggtgctcagggaccctctggtgccactggtttccctggagctgccggcagagtc
gggccccctggtcccaatggtaaccctggtgctgctggtccctctggccctgctggtaaa
gatggtcctaagggtgtgcgtggagacggtggaccctcaggcagacagggagatgctggg
ctgcgtggagccgctggatcccctggagagaagggagatgctggagaggatggtccctct
ggtcccgatggtccttcaggtccttcaggtctggctggacagcgtggtattgttggtctt
ccaggacagcgtggagagagaggtttccctggcctgccaggaccctctggtgagcctggt
aaacaaggatctcctggtggaagcggagaccgtgggccccctggccctgtggggccccct
ggactgactggacccgctggagagcccggtagagagggcaacgctggttctgatggaccc
cctggtagagatggagccactggaatcaagggtgaccgtggtaacaccggtcctgctggt
gctcctggcgcctcaggagctaatggtgcccccggccctgtcggccccaccggcaagcag
ggagacaggggagaggctggagccaaggaccagctgggacctgccgggcctgctggagcc
agangaatggctggaccccaaggaccccgtggagacaaggcgtgaggtggagagggtggt
gagagaggacagaagggacacaggagattcactggtctgcagggtctgcccggacctccc
ggtcaagctggagaccagggtgcatctggacctgccggaccaagtggatcaagaggaccc
cccggaccagttggtccctctggaaaggatggatccaacggtatgcccggccccatcgga
cctcccggaccccgtggtcgctctggagagactggtccctctggtccccctggaaactcc
ggaccccctggtcctcctggtcctcccggccctggtatcgacatgtctgccttcgctggc
ctgtctcagcctgagaaatcccccgatcccctgaggtacatgagggccgaccaggcctcc
ggaaacctgaggacgcacgacgccgaggtggacgccacgctcaagtctctcaacaaccag
atcgaaaacatccgctcccccgagggctccaagaagaaccctgcacgtacttgcagagac
ctgaagctgtgccaccctgactggaagagcggagagtactggatcgaccctaaccagggc
tgcaccatagacgccatcaaggtctactgtaacatggagactggagagtcctgcgtctac
cccaagcccgccagcatccccaagaagaactggtggtccagcaagagcaaggctgccaaa
cacgtctggttcggggagaccatgaacggaggattccacttcagctatggcgatgacagc
ctggctgccaacacggccagcatccagatgaccttcctgcggctgctatccaccgaggct
agccagaacctcacctaccactgcaagaacagtgtggcttacatggacggggccacgggt
aacctgaagaaggccgtgctgctccagggctccaacgatgtggagatcagggccgaggga
aacagccgcttcacgtacaccgtcatgcaggacggctgcacgaaacacacaggagcatgg
ggcaagacagtgattgactacagatcccagaagaccagccggctgcccatcgtggacatt
gctcccatggatattggaggagcggaccaagagtttggagtcgacgtcggtgcagtctgc
ttcttgtaa
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