Salvelinus sp. IW2-2015 (Arctic char): 111971189
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Entry
111971189 CDS
T05762
Name
(RefSeq) laminin subunit alpha-3
KO
K06240
laminin, alpha 3/5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04382
Cornified envelope formation
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111971189
04518 Integrin signaling
111971189
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111971189
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111971189
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_I
Laminin_G_3
EGF_laminin
ConA_2nd_BAM2
EGF_LMN_ATRN
GrpE
Spectrin_Anc-1
Motif
Other DBs
NCBI-GeneID:
111971189
NCBI-ProteinID:
XP_023853748
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All DBs
Position
LG13:complement(14087384..14105477)
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AA seq
1740 aa
AA seq
DB search
MKMTQGTVCWFGGVWGLLLWCALFGPCTDGQRAPQRHPNCRYDYLPQNHQSGKDPWHKGH
PRIPRKYCDTSFNNQSAGAITQRCGPGYYRERTGPHRGQCVPCNCNSLSNECDEQTGRCL
NCQYNTDGDRCERCKEGYYGNAAQKTCRGCPCPFRANNFAVACLDIGANEIECLCKPGYT
GTRCERCAPDYYGNPMIYGGRCQRCHCDATSTCDHLTGKCKKPDDPGTDDQCIECDSCTQ
ALLNDLENMDDGLELLRQQLQGIGSNSSPANLNQLEGAINETKALVGRYSTTVDAQGPKV
NLLEAEVMSLGQDISLLEDKASYSLSDAENVLVKVIQTKQRAEDFIPEAQDLLMNIEDLL
QQLSEANSSVTNITVGVEEVARMMKVVQRMVKEMRQLGCSNQTVTAAREQEDAHKLLDFI
KNNVAAPLDDNQAVANETAESLMTSVSALSDLAAAVAEANNMVNRTRSLNFNSTDFLRIL
TQLRGELERKRDSVLPEMNMTKDKLKNITGLVEMMKEMKKEYEHLAAEIDGAKPNLTKRL
NDIAKAKQKEGIVVMAEEHAEELNRLAMELHMAVHNATNSSDLQHASESIRAYSSIIKAI
EEAEMEANQSKEASDKALKDVEEQGLTNRSEELKHNASSLLTEAMNAEKDLRETSAKVDN
HKQRVGQTKNKREMLRKDALAVTENLKEIQRDDIGKLIDSAKATVNAANNTVNDVTDRLN
NISLGHIRLPNVSSNIGSVLDEAGNELKKLNETWPTLEDTLSRVQNLCSQAPPSVSMTDS
IRRIKDVIEEARDIVKRLSIGMTFNGKGHIELRPPTNVEDLKAFTAAELLLNRQETKPTR
GDRSRRRRQNTQDDRNLFVLYLGNKDSSKDFIGMAVKNNTLRCVYKLGGVVHELNTDHIT
RTKVNSTVFDKVVFNRVYQDAELSLTHRFPSQSVEVSKESNRPNTTVGLLNLDTNSVVFY
VGGYPDAFTPPVELRYPKYCGAIKLSTINDQFFSLYNFKNAINVDKQSYIKVSVSLQSTV
PYYFDGTGYGLVTAIKEIETPKRGVLKFHTNSQVENALLFYKGNEDSYTSVTVERGYVVL
QGRHGTQVLNAKSTRKVSLNNEQFVIVMDTTFKVHVAGVPTEIVKIDNIMEGFKHFYIGG
LPASLRERDNVTTPPFRGCIDNVILQSKEIEFNTTIGVSVGCPTSLLGVREATFHPGGSL
SVDPQDFWTTPAAMVSLGFRTMENKGVLLRTSEERHGYQLSLVDGYVMFNFDENALKSTK
TYNDGRWHYLTALRNGTQLELRVDNGDLGQHQTSPQDKPNEQQVVLGGETFRGCLANLHI
RRPEESFIPADFSSFTQKGDVILGMCRLQPPPQAIWEPASLQERPKKLKPRSGAVHTECR
LPKVSDPQAYQLTGAASWLSYIIAPEELNFRPHFSLEIRTRSSEGLLLHVSGNGDISQVS
LYMTNGKIKLSLGKDRVIYNKKKSNDGRWHTVMVSVEKNTFHLVVDGFRVPDGILPAEEG
SSLALQNPVYLGSDPASKTSWGQGGSLPKKSVIGCIRHFKVYNVLVGEPAANHGAPPCFD
GATETGAYFAGTGHVVLDKFFTVGSRFELTFEARPRNTTGLLFHARGRRRNSLSVFMRKN
KVEVHVNDGLGDYSASVTPQQNLCDGTFHVIAVSKQNNVVQLNVDSESQRTVGPSHSSYT
MTKDSFYIGGMSGTSKHKGVPVSSSFVGCLRNIKVNKKPVVFKTASSVVGPVNVNECPAD
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgacacaagggactgtttgctggtttggaggagtatggggattattgttgtgg
tgtgctttatttggcccctgcacagatggccagagagcaccacagagacatccaaactgt
aggtatgactatctgcctcagaaccaccagagtggtaaggatccttggcacaaagggcac
cccaggatccctaggaagtactgtgacacctcattcaacaaccagtcagctggcgccatc
acccagaggtgtggccctggatactacagagagaggacagggcctcataggggccagtgt
gtaccctgcaactgtaacagcctgtctaatgaatgtgacgagcaaacagggagatgtctg
aactgtcagtacaatactgatggggatcgatgtgagcgctgcaaggaaggttactacggc
aatgctgcccaaaagacctgtcgtgggtgtccatgtcccttcagagccaacaattttgca
gtagcatgtctggatattggtgcaaatgaaatcgaatgtttgtgcaaacctggctacact
ggaaccagatgtgagaggtgtgcccctgattactatggtaacccaatgatatatggaggc
aggtgccagcgatgccactgtgatgctaccagtacctgtgaccatctgactggaaagtgt
aagaagcctgatgatcccggcacagatgaccaatgcatagagtgtgacagctgtactcag
gccttactgaatgatttggaaaatatggatgatgggctggaattgctaaggcagcagctt
cagggcattggttccaacagctcaccagccaaccttaaccagctggaaggtgccattaat
gaaacaaaggctctggttggaaggtacagcactactgtggatgctcagggcccaaaggtc
aatctgctggaagcagaagttatgagtctgggtcaggacataagcctactggaagacaag
gcaagttactctctctcagatgctgagaatgtcttggtgaaagtgatccaaaccaaacag
agagccgaggattttatccctgaagctcaagatcttctaatgaatatagaagatctcctt
caacagctgagtgaggctaattctagtgtaaccaacatcactgtgggagtggaggaggta
gccaggatgatgaaggtggtgcagcgcatggtgaaggagatgagacagcttggctgcagt
aaccagacagtgacggctgccagggagcaagaggacgctcacaaactcttggacttcatc
aagaacaatgtggcagctccattagatgacaaccaggctgtagccaatgagacggcagag
tccctgatgacgtcggtatctgcgttgagtgatctggcagcggctgtggcagaagcaaac
aatatggttaacaggacacggagcctcaacttcaacagtactgacttcctaagaatcctg
acgcaactaagaggtgagctggagaggaaacgtgattcagtgcttcctgaaatgaatatg
accaaagataaactgaagaatatcacaggccttgtggaaatgatgaaggagatgaaaaag
gaatacgagcaccttgcagccgagatagacggagccaagcccaatctaaccaagaggctg
aatgatatcgctaaagcaaaacagaaggagggcattgtcgtcatggcagaggagcatgca
gaggaactaaacagactggcaatggaactacacatggcagtgcataatgccaccaacagc
tctgacctgcagcatgcctcagaaagcatcagagcctacagcagcatcataaaagccatt
gaagaggcagagatggaggccaaccaatccaaagaggcatccgacaaagctctgaaggat
gtggaggagcaaggtctgaccaacaggtctgaggaactaaagcataatgcaagtagctta
ctgaccgaggccatgaatgctgagaaggacctcagagagacctcagccaaagttgacaac
cacaagcaacgtgttggtcagaccaagaacaaaagagagatgctgagaaaagatgctctt
gcagttacagagaatcttaaagagattcaaagagatgacattgggaagctcatagactct
gccaaagcaactgtcaacgctgccaataacacagtcaatgacgtaacagacagactaaat
aatatcagcttgggacatataaggcttcctaatgtcagttcaaacattggcagtgtgctc
gatgaggctggcaatgaattgaagaaattgaacgagacatggcctactttggaagacacc
ctcagcagggtgcaaaacctgtgctcccaggctcctcctagtgtcagtatgacagacagc
atcaggagaatcaaggacgtgatagaggaggccagagacattgtcaaaaggctctctatc
ggcatgaccttcaatgggaagggtcacattgagctccgcccccccaccaatgttgaggat
ttgaaggcgtttacagctgctgaacttcttctcaaccgccaggagaccaagcccactagg
ggggaccgcagccgtaggcgcagacagaacacacaggatgacagaaacctctttgtgctc
tatctcggcaacaaggactcatccaaagacttcattggaatggctgtaaagaataacact
ctccgctgtgtatacaagctgggtggagtcgtacatgagttgaacaccgaccacataacc
agaaccaaagtgaactccactgtttttgacaaggtcgtctttaacagagtttaccaagat
gctgagctcagtctcacacacaggttcccatcacagtctgtcgaagtttctaaggagagt
aaccggcccaacacgacagttggcctcctcaacctggacaccaacagtgtggtcttctac
gtaggcggttatcctgatgccttcactcctccagtggagctgcgctaccccaaatactgt
ggagccatcaaactgtctactatcaatgatcaattctttagtctgtacaacttcaagaat
gccatcaacgtagacaaacagtcctatataaaggttagtgttagtctacagtcaacagtg
ccttattattttgacggcactggttacggtttggttacggccattaaagaaattgaaacc
ccgaaaagaggagtgctcaagttccacacaaacagccaggtggagaatgcattactgttt
tataaaggaaatgaggattcgtacactagtgttactgtggagagagggtatgttgtgctg
cagggaagacacggcacccaagtcctcaatgccaagagtactagaaaagtttcactcaat
aatgaacaatttgtaatagtcatggatacaacatttaaagtacatgtggctggagtacca
actgagattgtcaaaatagacaacatcatggaaggtttcaaacatttctacattgggggt
ctaccagcgtcattaagagaaagagataatgtcacaaccccaccattcagaggatgtata
gataatgtgattttacaatctaaggagattgagtttaacacgacaattggtgtcagtgtt
ggatgcccaacctcgcttttgggtgttcgtgaagctactttccaccctggtggctccctc
tcagtggacccacaggatttctggaccacccctgcggccatggtttctttggggttcagg
accatggagaataaaggtgttcttctcaggaccagcgaagagcgtcatggataccagctc
tcattggttgatggctatgtgatgtttaactttgatgaaaatgccttgaagtctaccaag
acatacaacgatggaagatggcactacttgactgcattaaggaatggcacacaattggag
ttgagggttgataatggtgatttgggtcagcatcaaacctccccccaagacaagcccaat
gaacagcaggttgtgttgggaggagagaccttcaggggctgcctggctaaccttcatatc
aggaggcctgaagaaagctttattcctgctgacttcagctcattcacccagaagggagat
gtgatcctggggatgtgcagactacagccccctcctcaggccatatgggagccagcaagc
cttcaagagaggcccaagaaactcaaaccaagatctggtgctgtgcatactgagtgcaga
ctgcccaaagtgtctgacccccaggcataccagctaactggggctgctagttggctcagt
tacatcatcgcacctgaagaacttaatttcaggcctcacttctccctggagatcagaacc
aggtcatctgaggggctgttgctccatgtctcagggaacggggacatctcccaagtctct
ctgtacatgaccaacggcaagatcaaactctcactggggaaggacagagtcatctacaac
aagaaaaagagcaacgatggaagatggcatacagtaatggtcagtgtggagaagaacact
ttccacctggtcgtggatggtttccgtgtgcctgatggtattctacctgcagaggagggt
tcctccttagccctgcagaacccggtctatctgggcagtgaccctgcctccaaaacctct
tggggtcagggtggctctcttcccaagaagagtgtgattggctgtatacgccatttcaaa
gtgtacaatgttctggttggtgaaccagccgccaatcacggggccccgccctgctttgat
ggggcaacagagacgggggcatactttgctggcacagggcatgtggtcttagataagttc
tttactgtgggctcccgttttgagctgacctttgaggctcgtccacggaacactacaggc
ctcctcttccatgccaggggtcgtcgtaggaacagcttaagtgtcttcatgaggaaaaac
aaggtggaggtccacgtgaatgatgggttaggtgactacagtgcatctgtgacacctcaa
caaaacctgtgtgatggcacattccatgttattgcagtgtccaaacagaacaatgtagtc
caactgaacgtggactcagagtctcagcgtacggtcgggccttcccactcctcctacaca
atgactaaggattccttctacattggtggcatgtccggcacatcaaagcataaaggagtg
ccagtctcttcttcgtttgttggctgcttgcggaacataaaggtcaataaaaagcctgtt
gtttttaagacagcctccagtgtggtcggccctgtgaacgtcaatgaatgcccagcagac
taa
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integrated database retrieval system