Salvelinus sp. IW2-2015 (Arctic char): 111971524
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Entry
111971524 CDS
T05762
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111971524 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111971524 (dhx15)
03009 Ribosome biogenesis [BR:
salp03009
]
111971524 (dhx15)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111971524 (dhx15)
Spliceosome [BR:
salp03041
]
Complex A
U2 snRNP components
U2 related factors
111971524 (dhx15)
Complex B
111971524 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111971524 (dhx15)
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
90S particles
Helicases
111971524 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
Atrophin-1
AAA_29
Motif
Other DBs
NCBI-GeneID:
111971524
NCBI-ProteinID:
XP_023854112
LinkDB
All DBs
Position
LG13:42838386..42851212
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRDRDVKPSVV
PPNTMMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggtgatgactactccaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgtgacgagcgmtctaaagacagggagagggac
agggaccgtgacagagatcgggaccgggaccgagatagggacgtgaagccctctgtcgtg
ccccccaacaccatgatggccgggggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccgttcacaaacctgccccacacgccgcgctactatgagatcttgaag
aagaggcttcagctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctccgggaaaaccacacagatcccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcggtggcctgtacccag
cccagaagggtggcagccatgagcgtggcccaaagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccatacgattcgaggactgcagctccgccaagaccata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgaccccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatccta
atgggagtactgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagt
gccacgttagacgccgggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccccgtggagatcttctacacccctgagccggagcgggactaccta
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ctgcttttcctcaccggacaagaggaaattgacgaggcctgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggagacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggcagccccccccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaatcctcgtatcagg
gtggagtctctcctggtcacggcgatcagtaaagcctcggcgcagcagagggcgggccgt
gccggcaggacacggccagggaagactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccggagaccctgatgcgggcgctggagctgctcaactacctggcggcgctcaacgacgac
ggcgacctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgcccaaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccat
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagagactactacatcaacatccgccgagcg
ctcgtcacaggctttttcatgcaggtggctcatttggagcgcacgggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccgtctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcacaaccaagaactacattcgcacctgctcggat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaatcgttgccaaactccagaccaaggagtat
tcccagtactga
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