Salvelinus sp. IW2-2015 (Arctic char): 111972023
Help
Entry
111972023 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: sodium- and chloride-dependent GABA transporter 2-like
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
111972023
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
salp02000
]
111972023
Transporters [BR:
salp02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
111972023
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
111972023
NCBI-ProteinID:
XP_023854627
LinkDB
All DBs
Position
LG13:complement(5626491..5674162)
Genome browser
AA seq
623 aa
AA seq
DB search
MKGDMESLPKMDPSNDHSRPLDIVPQSDEKMKERGQWGNKVEFVLSVAGEIIGLGNVWRF
PYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSEGGVTCWRKITPLFEGVGYAT
QVIVALLNFYYIIVLAWAIFYLSYSFTWDLPWASCNNTWNTDSCMEFQRRNDSFNQPRLN
ATSPVIEFWERRVLRISSGIDNIGSLNWDLVLCLAIAWILVYFCIWKGVKSTGKVVYFTA
TFPYIMLCILLIRGVTLPGAFIGIKFYLYPDLGRLSDPQVWMDAGTQIFFSYAICLGCLT
ALGSYNKYNNNCYRDCLSLCFLNSGTSFVAGFAIFSILGFMSYEQNVPISEVAESGPGLA
FIAFIAYPCAVSMMPFPLSLGPVFFFIMIRLSGLGQPFVCVGESVTDAHVDMYPKTFRRK
NRRELFILAVAIFSFLMGLIMLTEGGMYVFQLFDYYAASGMCLLFVAVFETVCIAWIYGA
DRFYDNIEDMIGYRPGPIIKYCWMYFTPATCLGTFAFSLIKYTPLKYNNEYVYPWWGYGL
GWLLALSSMLCVPLWVVIKMCSVEGTLKERFIILTTPSTDLPKTKKEQEKLLAIFAADGD
SLRQRHPPTKEGYFPVNEKESNC
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcgacatggagagcctgcccaagatggacccctccaacgaccacagtcggccc
ctggacattgtgccacagagcgatgagaagatgaaggagaggggtcagtggggcaacaag
gtggagtttgtcctgtctgtcgccggggagatcataggactgggaaatgtgtggcgcttc
ccttacctgtgctacaagaacggaggaggtgcgttcttcatcccctacctgatcttcctc
ttcacgtgtgggatcccagtattcttcctggagacagctctaggacagtacaccagcgag
ggaggtgtcacctgttggaggaagatcactccactgtttgaaggagtgggctacgccaca
caagtcatcgtggctctgttgaacttctattacatcatcgtcctggcctgggccatcttc
tacctgtcctactccttcacctgggacctgccctgggcctcctgcaacaacacatggaac
acagattcttgcatggagttccagaggaggaatgactctttcaatcagccacgtctgaac
gccacgtctcctgtcattgagttctgggagcggagggttctgcgtatctcctctggcata
gacaatataggatctctcaactgggacctggtgctgtgtctggccatagcctggatactg
gtttacttctgtatctggaagggagtcaaatccaccggcaaggtggtgtattttacagct
accttcccctacatcatgctgtgtatcctgctcatcagaggggtcaccctaccgggagcc
ttcataggaatcaagttctacctctacccagacctgggccgcctgtccgacccacaggta
tggatggatgcagggactcagatctttttctcgtatgccatctgtctggggtgtctgact
gccctggggagctacaacaagtacaacaacaactgctacagagattgcttgtcgttatgc
ttcctgaacagtgggaccagtttcgtggctggctttgccatcttctccatcctgggcttc
atgtcttatgagcaaaatgtgcccatctcagaggtggcagaatcaggtcctggtctggcc
ttcatagcttttatagcgtacccctgtgctgtgtctatgatgccctttcctctctctctg
gggcctgttttcttcttcatcatgattcgtctttctgggctgggacagccatttgtgtgt
gtgggagagtctgtgacggacgcccatgtggacatgtaccctaaaacgtttcgtcgtaag
aaccgcagagagctcttcattctggcggtggccatcttctccttcctcatgggtctcatc
atgctgacagagggaggcatgtacgtcttccaactctttgactactatgctgccagtggg
atgtgcctgctctttgtggctgtctttgagacagtttgcattgcttggatttatggtgct
gaccgtttctatgacaacattgaggacatgattggctaccgccctgggcctattatcaaa
tactgctggatgtacttcactcctgctacctgcttaggtacttttgccttctccctgatc
aagtacacccctctgaagtacaacaatgagtatgtgtacccctggtggggctacggcctg
ggctggctcctggccctgtcctccatgctctgtgtccccctctgggtggtcatcaaaatg
tgttctgtggaaggcaccctgaaggagcgctttataatcctgaccacaccgtccactgac
ttacccaaaaccaagaaggagcaagagaagctgctggccatctttgctgccgatggggac
agcctccgtcagagacaccctcccaccaaggaaggctacttccccgtcaacgagaaggag
tccaactgctag
DBGET
integrated database retrieval system
