Salvelinus sp. IW2-2015 (Arctic char): 111972214
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Entry
111972214 CDS
T05762
Name
(RefSeq) paired amphipathic helix protein Sin3b isoform X1
KO
K23213
paired amphipathic helix protein Sin3b
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
salp03036
]
111972214
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
111972214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
mTOR_dom
MCP_V20_C
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
111972214
NCBI-ProteinID:
XP_023854905
LinkDB
All DBs
Position
LG13:complement(17228756..17237926)
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AA seq
1223 aa
AA seq
DB search
MSVTXSGTMAKIQAHSNTKQINQIQDKAYVVQKQVQQQHFQKLKVEDALSYLDQVKIRFG
NDPGIYNKFLDIMKEFKSQSIDTPGVINRVSQLFHGHPDLVLGFNAFLPPGYRIEIPKNG
VVFLQSPFSAQVSPGQGKSMASPAVSATGSSVAEVGSAQSEAVASPESIYSSSGPPEPPS
RLSLPLPSRESPSQPQSSSVSPPASEPSPVEFDSAISYVNKIKNRFLDHPEIYRSFLEIL
HTYQVHCVINMKEQLEVKESRGHGSSGMTEDEVFSKVASLFKGQEDLLAEFGQFLPDAKR
SLFTGSSLTGKDHLKRAEDEDMSKQSKKRPRPMLLPHMTPLLKKKMKFSCSKDQSFASVG
KHGVLREFTFFDKLRRFFKSREVYENFLRCIALFNQEVVSGAELLQLVTPFLGKFPELYT
QFKSFLGDKELSHSVSGLSDRYMEGGGGREVDYASCKRLGSSYRALPKTYQQPKCSGRTA
ICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLES
VQKKLSRLSPEDQDRFRLDDCLGGTSEVIQRRAIYRIYGDKAPEIIEGLKRSPATAVPVV
LKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQGVNFKQNDMKALRSKSLLNEIES
VYDERQEQSTEEGGVVQQGRDGSSAPAVSDPHMVFTYEDKQILEDAASLIIYHVKRQPTI
HKDDKDHIKRIIQHFVPDLFFSRRGELSETEEWTDEEVEEGGDRGGGCGGIPGAVATSGS
QQHQPQHQQLNGESRRRRCASPHTVELGVASSHSLAPEGGEKVDLRDPEAEHQKELDGVY
NLFFVNNNWYFFLRLHQTLCQRLLRVYRQAERQLLEHRAEQNRERLLMAEGRDLAMELRL
KQPSEVELEEYYPAFLDMVRSLLDGNLESTQYEDTLREMFTIHAYIGFTIDKLIQNIIRQ
LQHLVSDEVCLQVAELYLAERKRGAAGANLSSQCVRTAWETSYQWKSERVMAEENCFKVM
FIQNQGQVTLTIELLDTEEAQADDPLDVQCLSSYMEQFVGTESTLCSQNEGYFFKPVFLP
RNLRHFRRWQVRQVEAMRCRREWHRQLGVESAGSLDCRFKLNTHKMVFVMNSEDYMYRRG
ALVKARKSQHRVAVNQHERFDKWHQGWLVEHVTPAAERSVHDWLIGEEEEDMIPCKTTCL
NTQVKGLPVNRYQVHYSRKPPSP
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttactarctccgggaccatggcgaaaattcaggcacacagcaacacgaagcaa
ataaaccaaattcaagacaaggcctatgttgtacaaaagcaagtgcaacaacagcacttt
caaaaactgaaggttgaagatgccctatcatacctggaccaagtgaaaatacgatttggg
aatgaccctggaatatacaacaaatttcttgacataatgaaagaattcaaatcacaaagc
attgacacaccgggtgttataaaccgtgtgtctcagctcttccacgggcacccggacctc
gtcttaggattcaatgccttcctgcccccggggtatcggatagagattcccaagaatggc
gtggttttccttcagtccccattctctgcccaggtgtccccaggtcaggggaagagtatg
gcaagccctgctgtgagtgccacaggctcatctgttgctgaagttgggtctgcccaaagt
gaagctgtggcatcgcctgaaagcatctactcatcctcagggcccccagagcctcccagt
agactgtccttgccactccccagcagagagagcccatcccagccacagtcctcctcagtg
tccccccctgcctcagagcccagcccagtagaatttgacagtgcaatcagctatgtcaac
aaaatcaaaaaccgcttcctagaccatccagagatctacagatccttccttgagatacta
cacacttaccaggtacactgtgtcatcaatatgaaggagcagcttgaggtcaaggagagc
cggggtcatggtagtagtggaatgacagaggatgaagttttctcaaaagtggccagcctc
ttcaaaggccaagaggacttactggctgagtttggacagttcttaccagatgctaagaga
tcactgttcactggcagctccctgactgggaaagaccatctgaagagggcagaggacgag
gacatgagcaaacagagcaagaagagacccaggcccatgctgctgcctcacatgacacca
ctgctcaagaaaaagatgaagttttcatgctccaaagaccagtcctttgcctcagttggg
aagcatggagtcttgcgggagttcacattttttgacaagcttcgccgtttcttcaagagt
cgggaggtatacgagaacttcctccgctgtattgctttgtttaaccaggaagtggtttcg
ggagcagagctgctgcagcttgtcactccctttctggggaagtttccagagctatatacc
cagttcaagtcttttctgggggacaaagagctctctcattcagtgtctggcctgtcagac
cgatacatggaaggaggtgggggcagggaggtcgactatgcctcttgcaagcgcctggga
tccagctacagagcactacccaagacttaccagcagcccaagtgcagcggtcgcactgct
atctgcaaagaggtgctgaatgacacctgggtttctttcccctcgtggtcggaggactct
acgtttgtgagctcaaagaaaaccccatacgaggagcagcttcatcgctgtgaggacgaa
aggtttgagttggatgtggtcctagagactaacctggccaccatccgggtcctggagagc
gttcagaagaagctgtcccgtctgtcgcctgaggaccaggatcgcttccgtctggacgat
tgtctgggaggcacatctgaggtcatccagcggcgagccatctaccgtatctacggcgac
aaggcccctgagattatagaggggctgaagaggagccctgctactgccgtgcctgtggtg
ctcaagagattgaaagcgaaggaggaggagtggagagaagcccagcagggcttcaacaag
atctggagggagcagtatgagaaggcctacctcaagtccctggaccaccagggggtcaac
ttcaagcagaatgacatgaaggcccttcgatccaagagcctgctcaatgagattgaaagt
gtttatgatgagcgtcaggagcagagcacagaggagggaggcgtggtccagcaggggcgt
gacgggagcagcgcgccagcggtcagcgatccccacatggtgttcacctacgaggacaag
cagatcctggaggatgccgcctctctaatcatctaccacgtcaaacgccagcccaccatc
cacaaggacgacaaggaccacatcaagcgcatcatccagcactttgtccccgacctcttc
ttctcccgccggggcgagctcagcgagacggaggagtggacggacgaggaggtggaggag
ggaggagaccggggaggaggctgtggcggtataccaggagccgtagcaacatcgggcagt
cagcaacatcaacctcagcatcagcagctgaacggggagtcgaggcggcggcgctgcgcc
tctcctcatacagtggagcttggtgtagcctcgtcccatagcctggctccagagggaggg
gagaaggtggacctgagagaccctgaggcagagcaccagaaggagctggacggagtctac
aacctgttctttgtcaacaacaactggtacttcttcctgcggcttcaccagaccctgtgc
cagcggctgctgagggtgtaccggcaggcggagaggcaactgctggagcaccgggcagag
cagaaccgtgagaggcttctgatggccgagggccgcgacctggccatggagctccgcctc
aaacagcccagtgaggtagaactggaggagtactatccagcgttcctggatatggtgcgc
agtcttctggatgggaacctggagtccacacagtatgaggacacattgcgggagatgttt
accatccatgcctacattggcttcaccatcgacaagctcatccagaacatcattagacag
ctgcagcacctggtgagtgacgaggtgtgtctgcaggtggctgagctgtacctggccgag
aggaagaggggcgcggcgggggctaacctgtcgtcccagtgtgtgagaacagcctgggag
accagctaccagtggaagtcggagagggtaatggccgaggagaactgctttaaggtaatg
ttcattcagaaccaaggccaggtgaccttgacaattgagctgctggacacagaggaggcc
caggctgatgatccattggatgtacagtgcctgtccagctacatggaacagtttgtaggg
acagagtcaacgctttgctcgcagaacgaaggctactttttcaaaccggtatttttgccc
aggaacctgaggcacttcagacgctggcaggtgcggcaggtggaagcgatgcgctgcaga
cgggagtggcacaggcagctgggagtggagagtgctggcagcctggactgccgctttaaa
ctcaacacccacaagatggtgttcgtcatgaactctgaggactacatgtaccgccgggga
gcgctggtcaaagcaaggaagtcccagcacagggttgctgtgaaccagcacgagcgcttt
gacaagtggcaccagggctggctggtggagcacgtgaccccggcggccgagcgctcggtc
cacgactggctgataggcgaggaggaggaggacatgattccgtgcaagaccacctgcctc
aacacacaggtcaaaggcctgcctgtcaacagataccaggtgcattacagtaggaaaccc
ccctctccgtag
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