Salvelinus sp. IW2-2015 (Arctic char): 111972478
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Entry
111972478 CDS
T05762
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
111972478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111972478
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111972478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
111972478
NCBI-ProteinID:
XP_023855243
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Position
LG14:51673967..51675920
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AA seq
395 aa
AA seq
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MSSPDAGYASDDQTQARCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSXNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQSTSLGGDGRVCMEGLGLGY
HHEHGYQVSTQSLGHYRDAQALGGASYEPYSLPTPDTSPLDAVESDSMFFSGHSQEECHM
MPAYAYHSQGAEYTPQDPHSNQHANHMLHRHLSSPTEQQQGHQAGPMPPSFNQLAMYYSQ
HCSPSHPKRHPGHGTGQRSPPPDSHPADQVEQMHPSELIGEVDRSEFEQYLSSSRPGDMT
GLSYGAHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccaggctaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagtgaagagcgagtcgtgcgctaccagctccgmgaaccagaaccgtggaaag
actgagccgcggatccggagacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aaacgactggcacaacaaaatcctgacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgagaagcgcccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccccaactacaaataccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatggtgtgtccgaccac
cagagcacctccctgggtggggacggccgagtatgtatggagggcctggggctgggttac
caccacgagcatggctaccaggtgtcgactcagtccctcggccactaccgcgacgcccag
gccctcgggggggcttcctacgaaccctacagcctgcccacccccgacacctccccacta
gatgccgtggaatcagactccatgttcttctccggccactctcaggaggagtgccacatg
atgcctgcgtacgcctaccactcccagggggcagagtacacacctcaggaccctcactcc
aaccagcacgccaaccacatgctccacagacacctctcctcccccactgagcagcagcaa
ggccaccaggctggccccatgcccccctccttcaaccaattggctatgtactacagccag
cattgtagccccagtcaccccaagcgacacccaggacatgggacaggacagcgctcccct
cccccagactcccacccagcagaccaggtggagcagatgcatccatcagagctgataggt
gaggtggaccggagtgagtttgaacagtacctgagctcctccagacctggggacatgaca
ggcctgtcgtatggggcacatgaggccaacatgcagggacctgagagcctgatatcctct
gtgctctctgatgccagcacagtgttctactgtaactacacctcctaa
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