Salvelinus sp. IW2-2015 (Arctic char): 111972567
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Entry
111972567 CDS
T05762
Name
(RefSeq) laminin subunit alpha-4
KO
K06241
laminin, alpha 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111972567
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111972567
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Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_EGF
Laminin_II
Laminin_I
Laminin_G_3
Colicin
CENP-O
Motif
Other DBs
NCBI-GeneID:
111972567
NCBI-ProteinID:
XP_023855347
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Position
LG14:17243913..17277196
Genome browser
AA seq
1880 aa
AA seq
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MSATRALPCLCLLFSIILSGIVCPAAPNGLDLEQLSVVKVCAKGYFLSNQNKCLPCNCKG
HSEACEEITGICISCQDHTTGDFCEICEDGYMPDVNTYGQHSCRPCACPLSIPSNNFAQH
CDRSSNILRCKCQEGYAGHYCERCAPGFYGNPMVIGDSCKRCDCNGNSDPNHIFNECHNV
TGFCQNCWGDTAGANCERCAPGFYGDAISAKNCRACECSKCGTGSCDDRTGTCHCKPGVT
GRLCDRCEEGHTGFNSCQGCRRCDCGAAGLRPTCHPLTHSCQCQPGAGGRYCERCLPDHW
NYGPSGCQKCDCASGHCDMHTGECLPEAAMVNPCNISCDECIWHLIGDLRLSNKTLDQVK
VSVLNISTGAAANDRLKYYNYTAHRLQTQFMNWRNKSSMMRTQTGQLEEASAALLSDMNH
LAETESVVKSMGDRVDEDTLQSVTLADELTTNLTALNVLIEEMISDWELYSVHQDLDPEV
IRKKTAMAEGMVTLMKKLDLSPREPTATDESTEAHDLLRHVRQLEKKLISTEGRVAPVRE
VLSRFTKKLSEAQEILQKAANTVQETEDMNKANTVKFQRSEAKQQILMENYEAVNDTLQT
AEDLIMDTENTVAEMVLLVQNVTEYHAAIDGASKLLQEKTEALSLADRDLVQRAQDHAND
LQSQAGELEYDLKRSDANGFVQKALDAANVYNNIVQYIEEANMTGLTALDLATRAEDATN
GINTQLGFLTTQSDNIFKESISLHSEQLEVETEVLDKMKYIEETKETMDDNTKKLAEVLK
DIKGIEPGRTTKRLELTREVAEGTLNRSVEVLQTITPIHEKVEEWATNMKNQDYSAAAFD
RAVVSAGEAVENLSELVPELLDKLRVIEKKPVNNVTTNIMRIRELIAQARSVAKKVQVSM
KFNGQSSVEVQPHINVADLKTVTTISLFIRVDPDKDPIEDRFIFYLGDRNGKKDYMGLAI
KNDNLVYIYNLGGEDVEIPLGSKPVSQWPPVFNLIKVERLGRHGKVFLTVPSQTSTDEQK
FIQKGEASGTYSLFNLDPEDTVFFVGGVPADVRLPPALSLAPFVGCIELASLNNDVISLY
NFKQTHKMDVVASTPCPRYKLAFSQSRIASYLFDGTGYALINNMERRGKFGIVTRFDIAV
RTVANNGILLLMVTGDNFFLLELKNGFLRLMYDFGFSGGPIVMESNLPKLQINDARYHEV
SVIYHYSKKIILLVDKSHVKSMENEKKTLPFSDIYIGGAPSRILLSRPELSSLMGLKGCV
KGFQFQKKDFNLLEEPGTIGISSGCPEESFMSRKAYFTGESYLGSAAKISPFDAFEGGLN
FRTLQPTGLLFYHIEGSDEFTIALENGAVVLNSRGTRVKSHKKQYNDGMTHFLVASANND
KYELVVDDKDKHEKKRPSSPASVSTVRSFYLGGSPSSSIKNFTGCISYAYISRQDRDIEP
EDFQKYTENVQTSLQDCPVERPPAALLSKHSKNSAKTKQGHTRKVGRDKSNQPQGLLGLN
SDDQEPGETEETPCYLSARPHATRHAHHYGGIANSRQEYTDIPESLAERSHFSLSLKTQS
SFGLIFYASDEAEDNYMALFLSHGKLVYTFNLGQQQVKVKSPEKYNDGTWHNVIFIRDGN
LGRLIIDGLTLLEDRAQGSNVSWHVSSTLYVGGVPPGRAQQNILRNSAYSFTGCVKNFQL
NGQWLSSVSQAFGVTPCFEGLSEPGTYFSEEGGYVVLDDTFNLGRKFELVVEVRPRVASG
VLLHVYTAAEEYLTMYIHQGAVVVLVNNGVREFFTQVTPRLGLCDGSWHRITVIRDANVI
QLDVDSDVNHVVGPLQHSTQSARAPVFIGGAPESLLPEGIATRRAYTGCMRNLTVNESQV
AFSKAALVSGAVSVGSCPAA
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctactagagctctgccatgcctctgccttcttttctccatcatcctctcaggg
atcgtctgcccagcggctcccaacggtttagatttggaacagctttcggtggtaaaagtg
tgtgcaaaaggatatttcctcagtaaccagaacaaatgcctaccatgtaactgcaaaggc
cattcagaagcctgtgaggagatcaccggcatttgtatatcatgtcaggaccacaccact
ggggatttctgtgagatctgtgaagatggatacatgcctgacgtcaacacatacggacaa
cactcctgccggccgtgcgcctgtcccctctcgatcccctccaacaactttgcacagcac
tgtgacagaagcagtaacatcctacggtgcaagtgccaagagggctatgctggacattac
tgtgagagatgtgctccgggtttctatggcaaccccatggtgattggtgactcctgtaag
aggtgtgactgtaacggtaactcggaccccaaccacatcttcaatgaatgccacaacgtg
accggcttctgtcagaactgctggggggacacggctggagccaactgtgaacggtgtgcc
ccgggtttctacggtgatgccatcagtgccaagaactgcagagcgtgtgagtgcagcaag
tgcgggacaggttcgtgtgacgacaggaccgggacgtgtcactgtaagcctggtgtcacc
ggccgactctgtgaccgatgtgaggagggtcacacaggtttcaacagttgccagggctgc
cggaggtgtgactgtggggctgccggtctccggcctacttgtcaccctctgacccacagc
tgccagtgccaaccaggggccggaggccgatactgcgagcgctgcctcccagaccactgg
aactacggcccctcagggtgccagaaatgtgactgtgctagcgggcactgtgacatgcac
actggggagtgtttgccagaagcagccatggtcaacccctgcaacatcagttgtgatgag
tgtatctggcacctgattggtgacctgaggctatccaataagacgctggaccaggtgaag
gtcagtgtgttgaacatctccactggggctgcagccaacgacaggctcaagtactacaac
tacaccgcccaccgtctgcagactcagtttatgaactggaggaataaatcatctatgatg
aggacacagacagggcagctggaggaggccagtgctgctctactctcagacatgaaccat
ctggcagagacagagagtgtagtgaagtccatgggggaccgagtggatgaagacacacta
caaagcgtcactctggctgacgagctgaccactaacctcaccgccctcaacgtactcatt
gaagaaatgatcagtgactgggagctctacagtgtccatcaggacctggacccagaggtc
atcagaaagaagacggccatggccgagggcatggtgacattgatgaagaaactggacctg
tccccacgagagcccaccgccaccgatgagtccacggaggcccacgacctccttagacac
gtgcgtcagctggagaagaagctgatcagtacggaaggccgcgtggccccggtacgggag
gtgctctcccgcttcaccaaaaagctctctgaggcccaggagatcctccagaaggctgcc
aacactgtccaggagacggaggacatgaacaaggccaacaccgtcaaattccagaggagt
gaggccaagcagcagatactgatggagaactacgaagctgtgaatgacaccttgcagaca
gctgaagacctcatcatggacactgagaatactgttgctgagatggttctcctggtgcag
aacgtgactgagtaccacgctgcgatcgatggtgccagcaagctactgcaggagaagact
gaggcgctgtccctggcagacagagacctggtccagagagcccaggaccatgcaaatgat
ctacagagtcaagcgggcgagctggagtatgatctgaaacgcagcgatgccaacggattc
gtgcagaaggctctggatgcagccaatgtgtacaacaacatagtccagtacatcgaagag
gccaacatgactggactgacagcactggatttagcaacaagagctgaggatgccaccaac
gggatcaacacacagctggggttcctgacgacccagagtgacaacatcttcaaggaatct
atttcattgcattctgagcaattagaggttgaaactgaggttctggacaagatgaaatat
attgaggagaccaaggagaccatggatgacaacaccaaaaaactagcggaagtactgaaa
gacatcaagggaattgagccaggcagaaccaccaagcgtctggagctcaccagggaggtg
gctgaaggcaccctgaaccgctctgtggaggtcctgcagaccatcacccccatccacgag
aaggtagaggagtgggccaccaacatgaagaaccaagattactctgctgcagcctttgac
cgcgctgtagtatctgctggggaagcagttgagaacctgtctgagctggttcctgagctg
ctggacaagctacgtgtcattgagaagaagccagtgaacaacgtgaccaccaacatcatg
aggatcagagagctcatcgcccaggccaggagtgtggccaagaaggtccaagtgtccatg
aagttcaacggtcagtcgtcggttgaagtgcagccccacatcaatgtggcggaccttaag
acagtgaccaccatcagtctgttcatcagggtggacccagataaggaccctattgaggac
cgcttcatcttctatctgggagacagaaacggtaagaaggactacatgggtctggccatc
aagaatgacaacctggtgtacatctacaacctgggaggggaagatgttgaaatcccactg
ggttcaaagcctgtcagccaatggcctccagtcttcaacctcatcaaagtggagaggctg
ggcagacatggaaaagtgttcctgactgtacccagtcagacgtccactgacgagcagaag
ttcatccaaaagggcgaagcctctggcacctactccctgttcaacctggaccctgaagac
actgtattcttcgtgggtggcgtccccgctgatgtcaggcttccacctgcactcagccta
gctccttttgtgggctgcatcgagttggcctctttaaataatgatgtcatcagtctgtac
aatttcaaacagacgcacaagatggatgtagttgcttcaacaccttgtcccaggtataag
ctggcattctcacagagtcgtatcgccagctacctgtttgacggaactggatatgccctc
atcaacaacatggagaggaggggtaaatttggcatcgtcacccggtttgacattgctgtt
cggacagtagcaaacaacggcatcctgttactcatggtcaccggggacaacttcttcctg
ttagagttgaagaatggcttcctacgtctcatgtacgactttggcttcagcggaggcccg
atcgtcatggagagtaacttacctaaactacagatcaatgacgcaagataccatgaggtg
tcagtcatctatcattactccaagaagatcattctattggtggacaagagtcacgtgaag
tccatggagaatgagaaaaaaacgttgcccttctccgatatctacataggaggggccccc
tcgcgcattctcctctccaggcctgagctatcctccctgatggggctgaagggctgtgtg
aagggcttccagttccagaagaaagactttaacctcctggaggaaccaggcactattggc
atcagcagcggttgtcctgaggagtcctttatgtcacgtaaagcctacttcactggagag
agctacctggggtctgcagcaaagatatctcccttcgacgccttcgagggtggccttaac
ttcaggacactgcagcctactggtctcctgttctaccacatcgaagggtctgatgagttt
accatcgctctggagaacggagcagtggtattgaactccaggggcaccagagtcaaatca
cacaagaagcagtacaacgatggaatgacccatttcctggtagcttcagcgaataatgac
aaatatgagctggtggtggatgacaaagacaagcatgagaagaaacgtccgtcctccccc
gcctcagtctccacagtgaggagcttctacttaggaggctctcccagtagcagcatcaag
aacttcactggctgcatcagctacgcctacatcagcagacaagacagggacattgagcct
gaggactttcagaagtacactgagaatgtccagacctccctgcaggactgccctgtggag
cgaccgcccgctgccctgctctcaaagcacagcaaaaactctgccaaaaccaagcagggc
catactaggaaggtgggcagagacaagtccaaccagccacaaggcctgttgggactgaac
agtgatgaccaggagccaggagagacagaagagacaccatgttacctgtccgccaggccc
catgccacccgccacgcccaccactacgggggtatcgccaacagcaggcaggagtacact
gacatcccagagtccctcgctgagaggtctcacttctccctgtccctgaagacccagtcc
tcgttcggcctcatcttttatgcatcagacgaggcagaggacaactacatggctctgttt
ctttcccatgggaagctggtatacaccttcaacctgggtcaacaacaggtcaaggtcaag
agcccggagaagtacaacgacggaacatggcacaatgttatttttattcgtgatgggaat
ctgggccgattaatcattgatgggctgacactgctggaggatagagctcagggctccaac
gtctcctggcacgtcagcagtactctctatgtgggaggggtgccaccagggagggcccag
cagaacatactgagaaactctgcatacagcttcactggctgtgtgaagaacttccagctg
aatggccaatggctgtcctccgtgtcccaggccttcggggtgacgccgtgcttcgaggga
ctctctgagccggggacatacttctctgaagagggaggatatgtcgtcttggatgacacg
ttcaacctggggcggaagtttgagctggtggtagaggtgcgccctcgtgtggcgtcaggg
gtactactgcatgtctacacagcagcagaggagtacttaaccatgtatattcatcaagga
gcggtggtggtgctggtgaacaatggggtccgtgagttcttcactcaggtcactcctaga
ctgggtctgtgtgatgggagctggcacaggatcacagtgatccgagatgccaatgtaatc
cagctggatgtggactcagatgtcaaccatgtggtgggacctctccaacatagtacccag
agtgccagggcccctgtgttcattggtggagctccagaatctcttctcccagagggcatt
gccactaggagggcctacacaggctgtatgaggaacctgacggtgaacgagagccaagtg
gccttcagcaaagctgccctggtcagcggggccgtcagtgtgggctcctgtccagctgcc
taa
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