Salvelinus sp. IW2-2015 (Arctic char): 111972686
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Entry
111972686 CDS
T05762
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
111972686
NCBI-ProteinID:
XP_023855484
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Position
LG14:16755722..16762096
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AA seq
661 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQQHYPSKSHVQTVSGEPGIPGSPGEPGP
MGPPGPPGNNGVGHTGQQGPPGAPGPAGYSAAGKPGNPGGPGKPGSNGMPGEKGHTGATG
AMGPRGSPGSAGSPGPAGYSSAGKPGPHGLPGGMGPRGESGLKGHPGIPGLQGQKGERGV
GIPGAPGANGQVGPMGPSGMPGQPGVGKSGAPGYPGESGKSGTPGRDGAPGAMGQPGPKG
HNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGLPGVGKPGANGMPGDRGSP
GTSGTTGQKGEPGPTGYTGATGATGLMGPAGPQGARGFQGEPGMQGSKGDVGMLGAPGAK
GTKGDQGHQGYAGKAGIPGAAGPAGATGATGHQGNKGAQGHAGSPGQPGSNGLAGAKGHT
GTPGGPGKPGESGIPGTRGPVGPSGPAGQAGLRGHAGLPGAPGPAGQMAKGMSGPMGPPG
APGSRGHDGNPGAMGPPGQPGPPGEMVYHHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLT
MAYPSAGSPVPFNQIIYNGEQHYDPQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGE
PIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNVHCSFTGFLIAS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagagtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatactaccatgtacagaaagtagccaagcagcagcagcattatccttctaagagc
catgtccaaactgtttcaggtgagccaggtattcccggatcccctggtgagccaggacct
atgggcccccctgggcctcccggcaataatggcgtgggacatactggacaacagggccca
cccggggcccccggacccgctggctactccgcagctggcaagcctggcaatccaggtggt
cctgggaaaccaggtagtaatggaatgcccggtgagaagggtcatactggtgcaactgga
gccatgggtccaagaggatcccccggttccgctggaagcccaggacctgctggatactct
tctgctggcaaacctggcccacacggtctgcccggaggcatggggccaaggggtgagagt
ggacttaaaggacatccaggtatccctggtctgcaaggacaaaagggagagaggggagtt
ggtattcctggggcaccaggtgcaaacggtcaagtgggcccaatgggaccctctggtatg
ccagggcaacccggagttggtaagtctggtgcccctggataccctggggagtctgggaag
tcaggtactccaggtagggatggagctccaggagctatgggtcagccagggccaaagggc
cacaatggaaaccctggggtaggagcaccaggaaaatcaggtgagaatggcagtccaggt
atgcctggaaatatgggacctaaaggtccccagggacatgccggacaaccaggtgcacct
ggcttaccaggagttggtaaaccaggagctaatggcatgccaggtgacagaggatcaccc
ggtacatcaggaaccaccggtcagaaaggagagccagggccaacaggttacactggggca
acaggtgctactggccttatgggtccagctgggccacagggtgctagaggattccaggga
gaaccaggtatgcagggatctaaaggagatgtcggcatgctgggcgctccaggggcaaag
ggaaccaagggggatcagggacatcagggttacgcagggaaggcaggtatccccggggca
gcaggcccagctggtgcaaccggcgctacaggacatcagggtaacaagggagctcagggc
catgctggctctcccggtcagccaggttcaaatgggcttgcaggagcaaagggacacaca
ggcacacctggaggcccaggaaaaccaggcgagagcggcatcccaggaacaagaggacca
gtggggccttcaggtccagcaggtcaagcaggtcttaggggtcacgcaggtcttcccggt
gcacccggcccagctggccagatggccaagggaatgtctggtcctatgggtccacctgga
gctcctggttccagaggtcacgatggtaacccaggtgctatgggacctcctggtcaacct
ggtccccctggtgagatggtctaccatcacgagaagagcatgcccatcaagtcccatgag
attatgatgcctcatgagatgatgaaggcccctatgtccgccttcagcgctgttctgacg
atggcttacccatctgcgggttcacccgttccattcaaccagattatttacaatggggag
cagcactatgacccccagactggcatcttctcctgccaggtaccaggtctctactacttc
tcctaccatatgcatgttaacggtgctaatgcattggtggcactgtacaaaaatggtgag
ccaatcatgttctcatacgatgagtacaacaagggcttcttggatcagttgtctggcagc
actgtacttatgctgaatgcccatgaccaagtctacattcaggtccctgatgaggagacc
aatggtgtctttgctgctgacaatgttcactgctctttcactgggttcctgattgcctca
acgtga
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