Salvelinus sp. IW2-2015 (Arctic char): 111972874
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Entry
111972874 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04140
Autophagy - animal
salp04148
Efferocytosis
salp05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111972874
04148 Efferocytosis
111972874
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
111972874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111972874
Membrane trafficking [BR:
salp04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
111972874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Motif
Other DBs
NCBI-GeneID:
111972874
NCBI-ProteinID:
XP_024003235
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Position
LG14:complement(1608403..1669949)
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AA seq
789 aa
AA seq
DB search
MHDAYETVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGSNRFEVTLEKSNK
NFSKKIQQLFVVSQYKVLISLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGE
AQLRMCVAVKKKLQLYYWKDREFYELQGDFSAPDIPKSMAWCQNSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVVPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAMV
HRPPYVLSCLPRYVEIRTFEPRLLIQIVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIKQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPADYRKQAALPQPPAHLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSNPHPVSLMEGIPTIKSRKKLLQIIDTSAQMLLHCYLHTNVALVSPLLRLDNNHCHIE
ESEYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMEN
LVIIFEFSPWVLKICAEDGLKIFTEDLTEVETLPRDKVLNFLREGFKELAVPYLEHIIHI
WEDTGPEFHNVLIQLYLERVQGLMKQYLNALPEGVPAVAAGKEEGDLGEFRNKLLCFLQV
STSYEPGRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHTAEEYCHRHYDKE
TDRNQDVYLSVQVQEERIFHQQVKCIITEEKTCRVCKKKIGNSAFARYSNGVVVHYFCCK
DRGVCPTEQ
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaacggtccctatcctggagaaactgcctcttcagattgactgt
cttgcggcttgggaggactggcttctggtagggactaaaccaggccatctcctgctctac
aggataaaaaaggatgcaggtagcaaccggtttgaggtgactctggagaagtccaacaag
aacttctccaagaagatccagcagctgtttgtcgtgtctcagtacaaggtcctcatcagt
ctgttagagaacaacatccatgtacatgaccttttgaccttccagcagattactgtggtc
tccaaggccagaggggcaacgctcttcgcctgtgacctgcagcagtccccctcgggagaa
gcccagctgaggatgtgtgttgctgtgaagaagaagcttcagctgtactactggaaggac
agggagttctacgagctacagggggacttttctgctccggacatcccgaagtccatggcc
tggtgtcagaactccatctgtgtcgggttcaagagggactactacctcatccggatggat
ggtcgtggttccatcaaggagctcttccccacggggaagcagctggagcccctggtggtc
cccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgag
gagggggtctgcactcagaagtgtgctctgaactggaccgacatccccatcgcaatggta
cacaggccgccatacgtactgagctgcctgccccgctatgtggagatcaggacctttgaa
cccagactgctgatccagattgtggagctgcagagaccacgattcatcacctcagctggg
cccaatatagtgtacgttgccagcaaccattttgtctggcgcctggtacctgtgtccatc
gccagccagatcaaacagttactacaggacaagcagtttgaactggccctgcaactggcc
aatatgaaggacgatgtggaaggagacaagagacagcagattcaccacatccagaatctc
tatgccttcaatctgttctgtcagaagaggttcgatgactccatgcaggtgttcgctaag
ctcggcacagatcccacccatgtgattggtctgtatcccgacctgctccccgctgactac
cgtaaacaagctgcactaccccaaccccctgcccatctgtctggggcagagctggagaag
gctcacctcgcgctcatagactacctgacacagaaacgcagtcacctggtgaagcagctg
aatgactcgaacccgcaccccgtctccctcatggaaggaattcccaccatcaagagcagg
aagaaactcctgcagatcatcgacaccagtgctcaaatgctactgcattgctacctgcat
accaacgtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgag
gagagtgagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgag
aagaagggcctgcatcagaaagccctgcaggtgttgttggatcagtccaccaaggctaac
tctcctctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaat
ctggtcattatcttcgagttctctccctgggttctgaagatctgtgctgaggacggactc
aagatcttcactgaggacctcacggaggtagagacccttcccagagacaaggtcctgaac
ttcctgagggaggggtttaaggagctggctgtcccctacctggaacacatcatacacatc
tgggaggacacgggacctgagttccataacgtcctcattcagctgtacctggagagggtc
caggggctcatgaagcagtacctcaacgccctgcccgagggggttcctgcagtggctgct
gggaaggaagagggggacctgggagagtttaggaacaagcttctgtgtttcctgcaggtc
tctaccagctacgagcctggacgacttatcagcgacttcccctttgatggtcttctggag
gagcgggccctgctgctgggtcggatggggaaacatgaacaggccctcttcatctacgta
cacgtcctgaaggacacacacacggcagaggagtactgtcataggcattatgacaaagag
acggacagaaaccaagatgtgtacctgtctgttcaggtccaggaggaacgtatcttccac
caacaggtgaagtgtatcatcacagaggaaaagacctgcagggtctgtaagaagaagata
ggaaacagcgccttcgccaggtattccaacggtgttgtagttcattacttctgctgtaag
gaccgaggagtgtgtcctacggagcagtga
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