Salvelinus sp. IW2-2015 (Arctic char): 111972985
Help
Entry
111972985 CDS
T05762
Symbol
rttn
Name
(RefSeq) rotatin isoform X1
KO
K16484
rotatin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
salp03037
]
111972985 (rttn)
Cilium and associated proteins [BR:
salp03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
111972985 (rttn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RTTN_N
TPR_Trm732_C
ARM_LIN_2nd
Motif
Other DBs
NCBI-GeneID:
111972985
NCBI-ProteinID:
XP_023855863
LinkDB
All DBs
Position
LG14:35782264..35841759
Genome browser
AA seq
2273 aa
AA seq
DB search
MELSPLIKKIGHSLAEIRVRALKSIICKLDHSLLSVSDLVQEKMLFVYLLEWFNFPEVPM
QEEVLQLISTLSKHPTAAQMLRDVGAVEFLTQLSPNVEPRLRAIIDGIFDLLFQLPELLP
ACPTIYSNIHQLQNTTTAVPLEEDSPAVGYFQTKRPSHIDVPPQRIAVNNSVRCLKFSTF
PWLALTTTDQHILSSNESSLRSNNHNLVRTTCELLRDVIMQDFPAEIFLQRPSIVQNLLS
ILRLTPGESEAGYLRLQAVACLQQLCVGLRRRLRFHRDPSFYSAKQDPVSQNSSLSYSQE
VHGGGAQRSLASSPGGECFPRPSVVGRNGQRPRGDGQDGDAASNSSNSSQRGGAAAQASR
QTAPSPADAAQLELPDLGVEDVLELQLQQLSLAQFTVATMEHAIPLLRTDGVRVFRGVCE
LLCEAVVLLRDGVCDLVWDDTSLVGMELREKLKITMETLGDIMTYHESCSSDCPESSLVQ
HRLAYVATAVFTIRLLQTILPLEKASGHLPESAVAVLLSLCLDRPFSLAYPSMAEAAVAY
LEQVNPEGHDLYRRTSRAALWMESTCMFLKETQQQGDKNWLELLELADQAIDGFPYHQHL
PIVKECIHICSYLWKFEQASPLLQTESQRVLLKLLTHPLLPVKTETYTCTLNVVKECLGV
QNVVKPVSSVCSGVNFLLHPKVLYQISAFGLQDPIGKVNSAAKDILLFLLKCPLMMTAST
WDRFNQALYPVIPILQSYAGTEDALGNCVLLISEVSNEVRDGVFPNTAKLRAALRLLFTK
EPEVRAAAVQHLLPHLTSVEGATTVRPTLEGPVLSSLPSLFCLNNALDINLDSSDKSFLK
VESVEKLFSILTSDTVDLTLRRSAAEQLAVVLQETAMHPVLKSLGVTDKVICFITESVNG
HRKSMDCLLEPCVCILRKLVYADPSLRHLLAEKNPLLITLLRASLLVKENKGDVREAAVL
MCLLLFDEIATVEVWSENSSSDVALSPFSLPVSVIRRYSLPFQAASHHAVSPYCSVLPPY
SDLLSLTPAKETLQLAWNTAWHSGIDNLLEQLRGIRSDVADFHSDLSLSGSQVLSLRATH
LPSGLQDCVQDIVMAAGHASVTSALSRLRLHLLIDRMAITGTHTHSCRDTLRSLIWQPAI
ARFVQVRPACVEDERLLVEVIAFLSAYFKQSHLESEDKDLRWILELLLKQETNSLLDLLL
GEESQTHTASQGETEELVELRAQINQRLQRELTGFINTLLHRLTHTTDRFCLALAGPFES
QLAVRFLQCLRVSDAPRFYGLPSLERNLLGMVSLTAQPGWSSHCPTMEPQSLCTKYLSGL
LEVISSFYVEWGGNSMSFMGKGVTKNAVICLLHLSHEMMAQNKDKDFISQWSLGQEAGSD
DPSGSQLGLAWLIPLWVDRDPEVRFASLGVGSALSSLPSGCQSLSSSCQNISGGLWGTLL
NILLDQQESTMVRREAVFILQNLLVMPMPATADQVTDSTWQSPCVHDESSGVCLVGLQAL
QALLYHCQFFQHTALMATACYRGRYTFDLQPSARDPGPQDSTTEEADDSLRLWRPPKGVP
VNPSRASGSLSTSSTLIIPGGSRLQSPVPTSLNATAQDTPASRLXAQGQSDTDTIDSVLS
QDSRLADPAPDPTCVIVTPDLLSALCGLLANLLAVLPEFTLSALTHSQLFQSLASLVDAA
AIERCLGELKTNTLPGDQEDIKRQVLTLLKFLSSFSKFLKSCFILSSDLIGQMDFLKPLL
ANLFTVLTLDTKDLGLFSFSARTPISGVCVCFLDLSGDGTCGAVCVCWTDVLMLLATVVR
RDGSAAYQSLSAALGRCWNTFTATLSVCVDQSFSDPPLHAAVLQFLCVVLSEEAKRRPLE
VTTLNPDLQLTPLSEALNGASGGQLCELLLESFEKRAFQDPVKKKTAKALMALLACSSTA
QNHAAKAGLIDSCVEQMKLMHSHLHMESVRPGRGRRKEESYMKEIKMSLEILRNSLYQNS
QSKVVATDCRLAAVLHALWPWFLLDDAAMESVLELLCVYTANCTTACSSLCCGLASGPRG
PPGGSLMHCVMKLASGVAPDNSLVQQLAFSLLANLAINKDCKGVLHKSNFLQPFLCLPVP
KPGSKTGAMGLLGLWLRLLLSVSFGEDGQLSVLRLTGALDLLADLAATQPQRQRRYSNGS
RPITTTDNALLILHNVCFSSANKPKVLANDKAMRVLVSCLDSKEAEVRSIGASALWALLH
NYQKAKTTLKCPSVRLRVHEAYKVAKKDAEKNPDIMNTYLLKCLENLIQLLNT
NT seq
6822 nt
NT seq
+upstream
nt +downstream
nt
atggagttatctccgcttataaagaagattggtcactccttggcagagatcagagtccga
gcattgaagagcatcatttgtaagctagaccactctctcctctctgtctctgacctggtc
caggagaagatgctgtttgtttacctgctggagtggtttaacttccccgaggtgccaatg
caagaggaggtcctgcagctgatcagtactctgtccaagcaccctactgcagcccagatg
ctgagagatgtcggggcagtggagttcctcacccaactctcccccaacgtagagccacgg
ttacgggccatcatcgacggcatcttcgacctgctgtttcagcttccagagctacttcct
gcttgtccaaccatctattctaatatacaccagttacagaacaccactactgcagttccc
ctagaagaggactctccagcggtgggctatttccagacaaagaggccgagtcacattgat
gttccaccacagaggatagcagtgaataactccgttagatgtctgaagttttctacattt
ccctggttggctttgaccacaacagaccaacacatattgtcatctaatgagagttctcta
aggagtaacaaccacaacttggtgaggaccacgtgtgagctcctacgtgacgtcatcatg
caggacttcccggctgagatatttctccagcgtcccagtatcgtgcagaacctcctgtcc
atcctgaggctgactccaggtgagagtgaggcgggctacctgagactgcaggcagtggcc
tgtctacagcagctgtgtgtggggctgaggaggagacttcgtttccacagagaccccagc
ttctactccgcaaagcaagacccagtgtcccagaactcgtcactgtcttactcccaggag
gtgcatggggggggggcccagcgctccctggcctcgtccccaggaggagagtgctttcct
cggccctctgtggtggggcgtaacggccaaaggcccagaggggacggccaagatggggat
gctgcctccaacagcagcaatagctctcagagaggtggagctgccgctcaggcctccagg
cagaccgctccctcgcctgcagacgcagcccaactagagctgcctgatctgggggtggag
gacgtgctcgaactgcagctccagcagctcagcctggcccagtttactgtggccaccatg
gagcatgccataccactgctcaggacagacggcgtgcgtgtgttccggggtgtgtgtgag
ctgctgtgtgaggcggtggtcctgctgagagacggtgtgtgtgatctggtctgggacgac
accagcctggtggggatggagctgagggagaagctgaagattaccatggagacactgggt
gacatcatgacctatcatgagagctgttcctcagactgtcctgagagttcattggtccag
cacagactggcctacgtagccactgccgtcttcaccatcagactgctgcagaccatcctg
cccctggagaaggccagtggtcatctcccggagagtgctgtggcagtcctcttgtctctg
tgtctggaccggcccttcagcttggcctatcccagcatggcggaggctgcggtggcctac
ctggagcaggtgaaccctgaaggccatgacctctacaggaggaccagccgtgctgctctc
tggatggagtccacctgcatgtttcttaaggagacgcagcaacagggagataagaactgg
cttgagttactggagctggcagaccaggccatagatggttttccataccaccaacaccta
cccattgtcaaggagtgcatccacatctgctcctacttgtggaagtttgagcaggccagt
ccgctgctccagacagagagccagagggttctactgaagcttctgacccatcccctcctc
cctgtgaagactgagacctacacctgcactctcaatgtagtcaaggagtgtcttggggtt
cagaatgtggtcaagcccgtgtcgtcagtctgtagtggggttaatttcctccttcacccc
aaagtcctctaccagatcagtgcatttggactccaggacccaattgggaaggtaaactct
gctgccaaggatattctgctcttcctgctgaagtgcccattaatgatgacagcatcaaca
tgggacaggttcaaccaggcactttacccagtcatccccatattacagagttacgcaggc
acagaggatgcgctgggaaactgtgttcttctgataagtgaagtgtcaaacgaggtgaga
gacggcgtgtttccaaacacagccaagttgagagctgcgctacgactactcttcactaag
gagccggaggtccgagctgcagcagtccaacaccttcttccccacctgaccagtgtagag
ggggctactacagtcagaccaaccctggagggtcctgtcctctcctctctcccctccctc
ttctgtctcaacaatgcactggacatcaacctggacagcagcgacaagtccttcctcaag
gtggagtcagtggagaagctgttcagcatcttgacctctgacactgttgacctgaccctc
aggaggtcagcagcagaacaactggctgtcgtcctacaggaaacagcaatgcacccagtg
ttgaagagtcttggtgtaacagataaagtgatctgcttcatcacagagagtgtgaacggc
cacaggaagagcatggactgcctgttggagccgtgtgtgtgtattctgagaaagctggtg
tatgcagacccctccctgaggcatcttctggctgagaagaaccccctcctcatcactttg
ctcagggcttcattgcttgtcaaggagaacaaaggggatgttcgtgaggcggctgtgttg
atgtgtctgctgctctttgatgagattgccacagtagaagtgtggtcggaaaattccagc
tccgacgtggctctctcaccattctctctccctgtgtccgtcatacgaaggtacagccta
ccgttccaggccgcgtcccaccatgcggtgagcccctactgctccgtcctgcccccctac
tctgacctcctctccctgacccccgctaaggagaccctgcagctggcctggaacaccgca
tggcattctgggatagataacctcttggagcagctccgtgggatccgcagtgatgtcgcc
gatttccacagtgatctgagcctgtcagggtcacaggttctgtcgttacgggcaacgcac
ctccccagcggccttcaggactgcgtccaggacatcgtcatggcagcaggccatgcctct
gtgacctctgcactctccaggctccgcctccacctgctgattgacaggatggccatcaca
ggcactcacacacacagctgcagggacactctccgttccctcatctggcagcccgccata
gcaaggtttgtgcaggtgcgtccagcgtgtgtagaggatgagaggttgctggtggargtt
atagcgttcctgagcgcctacttcaaacagagccatttagagtcrgaggacaaggacctc
cgctggatactggagctactcctcaaacaggagaccaactcactgctggacctgctgctc
ggcgaggagtcgcagacacacactgcgagtcagggagagacggaggaactagtagaactg
agggcccagatcaaccagagactacagagagaactgacagggttcatcaacacattactg
caccgcctcacacacaccaccgacaggttttgcttggcgctggcagggcccttcgagagc
cagctggcagtgcggtttctccagtgcctgcgggtgtcagacgccccacgcttctacggc
ctcccgagtctggagaggaatctgctgggcatggtcagcctcacggcccagcctggctgg
agctcacactgtcccaccatggagccccagtctctctgcaccaagtacctcagtggacta
ctggaggtgatctcgtcgttctacgtggagtgggggggtaactccatgtccttcatgggg
aaaggagtcaccaagaatgctgtcatctgtctgcttcacttgtcccatgagatgatggcc
cagaacaaggacaaggacttcatttcccagtggtctttgggtcaggaggcggggtctgat
gaccccagtgggtcacagctgggtctggcctggctcatacctctgtgggtggacagagac
ccggaggtgaggtttgccagcctgggtgtgggctctgccctgtcctctctgcccagtgga
tgccagtctctgagtagcagctgtcagaatatcagtggaggtctgtggggaaccctgctc
aacatcctcctggaccagcaagagagcaccatggtccgcagagaggcggtgtttatcctc
cagaacctactggtgatgcccatgcctgccacagctgaccaggtcaccgactctacctgg
cagagtccgtgtgtccatgatgagtcttcaggtgtatgtctggtgggtctccaagcccta
caggctctgctctaccactgtcagttcttccagcacactgccctcatggccacagcctgc
tacagaggcaggtacaccttcgacctgcaaccctcagccagggaccccggccctcaggac
agcaccactgaagaggcggatgactccctgaggttgtggagacctcctaaaggagtccca
gtgaatcctagcagggcctctggctccctgtccacctccagcactctgatcatacctgga
ggctcaaggcttcaatcccctgtgcccacttctctcaacgctactgcacaagatacaccc
gctagcagactgatrgctcaaggtcagagtgacacagacaccattgactctgtcctctcc
caggactccagactggctgaccccgctcctgaccccacctgtgtcattgtaaccccagac
cttttatcagcactctgcggcctcctggccaacctgttagccgtgctaccggagttcacc
ctctcagccctcacacacagccagctcttccaatcactggccagtttggtggacgcagca
gccatagagagatgtctgggtgagctgaagactaacacactaccaggagaccaggaggac
attaaacggcaggtcctgaccctgctcaagttcctgtccagcttctctaagttcctgaag
tcatgtttcattctgagctcagatctgattggtcagatggacttcctgaaaccgctactg
gccaatctcttcactgtcctcacacttgataccaaggacttgggcctcttcagcttctca
gctcgtactccgatctccggtgtgtgtgtgtgttttctggacctctcaggcgatggtacc
tgtggtgctgtgtgtgtttgctggacagacgtgttgatgcttctggctactgtggtgagg
cgggatggctctgcagcctaccaatctctctctgctgcactagggagatgctggaacaca
ttcacagccacgttgtcagtgtgtgtggaccagtcgttcagtgaccctcccctccatgct
gcggtactacagttcctgtgtgtcgtcctgtctgaggaggccaagagacgacccctagag
gtcaccaccctgaacccggacctccagctgacccctctgtctgaggccctgaacggcgcc
tccggtggacagctctgtgaactattgctggagagttttgagaagcgtgcgttccaggac
ccagtgaagaagaagacagctaaagctctcatggctctactggcctgcagttccactgct
cagaaccacgctgccaaagctggtttgattgacagctgtgtggagcagatgaaactgatg
cacagccacctccacatggagtcagtcagacctggcagaggaaggaggaaggaggagagc
tatatgaaggaaataaagatgtctctggaaatcctcaggaacagtctttaccagaacagc
caatccaaagttgtggccactgactgtcgattggctgctgtgctgcacgccctttggcct
tggttcttattggatgatgctgctatggagtcggtcctggaattgttgtgtgtctacaca
gccaactgtaccacagcttgtagctctctgtgttgtggtttggcctctggcccccgaggg
cccccaggtggctccctgatgcactgtgtcatgaagctggcctctggggttgcccccgac
aacagccttgtccagcagctggccttctccctgctggccaacctggccatcaacaaggac
tgcaaaggagtcctgcacaagagtaacttcctgcagccgtttctgtgcctgcctgtccct
aaaccaggcagtaagacgggtgccatggggctgttgggcctgtggctgaggctgctcctg
agtgtttccttcggtgaggacggccagctgagtgtcctgaggctgactggagccctggac
ctccttgctgacctggccgctacgcagccccaacgccagcgtcgctatagcaatgggagc
aggcccatcaccacgacggacaatgccctcctcatcctccacaatgtctgtttcagctct
gccaacaaacccaaagtactggccaacgataaggccatgagggtgctggtgtcctgtctg
gacagtaaagaggctgaggttcgctctataggggcctcggcactatgggccctgctccac
aactaccagaaggccaagaccactttgaagtgtccctctgtcagactcagggtgcatgaa
gcctataaagttgctaagaaagatgcagagaaaaatcctgacatcatgaacacctacctg
ttgaagtgccttgagaacttaattcagctgctgaatacctga
DBGET
integrated database retrieval system
