Salvelinus sp. IW2-2015 (Arctic char): 111973044
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Entry
111973044 CDS
T05762
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04519
Cadherin signaling
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
111973044 (vim)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111973044 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111973044 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
salp04812
]
111973044 (vim)
04147 Exosome [BR:
salp04147
]
111973044 (vim)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
111973044 (vim)
Cytoskeleton proteins [BR:
salp04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
111973044 (vim)
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111973044 (vim)
Exosomal proteins of other cancer cells
111973044 (vim)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
FKBP15
ZK652
DUF1664
CCDC110
TPR_MLP1_2
PMD1-like
KIF21A_4th
BLOC1_2
GAS
TolA_bind_tri
Tropomyosin
CCDC39
ODF2_N
CENP-F_leu_zip
Trimer_CC
Motif
Other DBs
NCBI-GeneID:
111973044
NCBI-ProteinID:
XP_023855961
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All DBs
Position
LG14:complement(39195776..39204233)
Genome browser
AA seq
462 aa
AA seq
DB search
MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVA
ELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcg
tcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgct
gagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcct
gatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaac
ctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaat
cgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctct
cgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga
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