Salvelinus sp. IW2-2015 (Arctic char): 111973044
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Entry
111973044 CDS
T05762
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111973044 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111973044 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
salp04812
]
111973044 (vim)
04147 Exosome [BR:
salp04147
]
111973044 (vim)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
111973044 (vim)
Cytoskeleton proteins [BR:
salp04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
111973044 (vim)
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111973044 (vim)
Exosomal proteins of other cancer cells
111973044 (vim)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
FKBP15
DUF1664
TPR_MLP1_2
KIF21A_4th
BLOC1_2
GAS
TolA_bind_tri
Tropomyosin
CCDC39
CENP-F_leu_zip
Trimer_CC
Motif
Other DBs
NCBI-GeneID:
111973044
NCBI-ProteinID:
XP_023855961
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Position
LG14:complement(39195776..39204233)
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AA seq
462 aa
AA seq
DB search
MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVA
ELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcg
tcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgct
gagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcct
gatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaac
ctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaat
cgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctct
cgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga
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