KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111973044
Entry
111973044         CDS       T05762                                 
Symbol
vim
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04519  Cadherin signaling
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04519 Cadherin signaling
    111973044 (vim)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111973044 (vim)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111973044 (vim)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:salp04812]
    111973044 (vim)
   04147 Exosome [BR:salp04147]
    111973044 (vim)
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     111973044 (vim)
Cytoskeleton proteins [BR:salp04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     111973044 (vim)
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111973044 (vim)
  Exosomal proteins of other cancer cells
   111973044 (vim)
SSDB
Motif
Pfam: Filament Filament_head FKBP15 ZK652 DUF1664 CCDC110 TPR_MLP1_2 PMD1-like KIF21A_4th BLOC1_2 GAS TolA_bind_tri Tropomyosin CCDC39 ODF2_N CENP-F_leu_zip Trimer_CC
Other DBs
NCBI-GeneID: 111973044
NCBI-ProteinID: XP_023855961
LinkDB
Position
LG14:complement(39195776..39204233)
AA seq 462 aa
MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVA
ELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcg
tcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgct
gagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcct
gatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaac
ctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaat
cgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctct
cgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga

DBGET integrated database retrieval system