KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111973044
Entry
111973044         CDS       T05762                                 
Symbol
vim
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111973044 (vim)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111973044 (vim)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:salp04812]
    111973044 (vim)
   04147 Exosome [BR:salp04147]
    111973044 (vim)
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     111973044 (vim)
Cytoskeleton proteins [BR:salp04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     111973044 (vim)
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111973044 (vim)
  Exosomal proteins of other cancer cells
   111973044 (vim)
SSDB
Motif
Pfam: Filament Filament_head FKBP15 DUF1664 TPR_MLP1_2 KIF21A_4th BLOC1_2 GAS TolA_bind_tri Tropomyosin CCDC39 CENP-F_leu_zip Trimer_CC
Other DBs
NCBI-GeneID: 111973044
NCBI-ProteinID: XP_023855961
LinkDB
Position
LG14:complement(39195776..39204233)
AA seq 462 aa
MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIY
ASKNVRLRSSAPMPRLSSDTVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRF
LEQQNKILLAELEQIKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIE
RLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVA
ELQAQIQDQHIQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAAN
RNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTIS
RLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNL
RESMLEARPMIDNLSKKVVIKTIETRDGHVINESTQNHDDLE
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaaccggacaaccaacaggcaaaccacctcttcatcctcttacaagaggatgttcggc
ggcgaaggacggcctggtgtcgggatggctcggtccaccttgtctagccgccagtactcg
agcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctac
gcctccaagaatgtccgacttcgcagcagcgccccgatgccccggctctcatcggacacc
gtggacttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgag
aaggcggagatgcagcacctcaatgacaggttcgccagctacatcgacaaagtgcgcttt
ctggagcagcaaaacaagatcctgttagcggagctggagcagataaagggcaaaggcgcg
tcccgtatcggggatctgtacgaggatgagatgagggatctgcggaggcaggtggaccag
ctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgag
aggctcagagagaagctccaagatgagatgatccagaaagaggaagcagagcacaacctg
cagagcttcagacaggatgtggacaatgcctcccttgctcgtctggacctggagaggaag
gtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgct
gagctgcaggcacagatccaggatcagcatatccagatcgatatggatgtggccaagcct
gatttgacggctgccctaagggacgtgcgtgtgcagtacgagaccttggccagcaggaac
ctccaggagtctgaagactggtacaaatccaagtttgctgacctgtcggaggctgcgaat
cgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggta
caggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcag
atgagggagctggaggagagctttggctgcgaggctaataacttccaagacaccatctct
cgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtac
caggaccttctcaacgtcaagatggccctggacatagagatcgccacctacaggaagctg
ctggagggagaagagagcagaatcaccactcccatgcccaacttctcatcatttaacttg
agagaatccatgctggaggcaagaccaatgattgacaacctgtcaaagaaggttgtgatc
aagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgac
ttggagtga

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