Salvelinus sp. IW2-2015 (Arctic char): 111973416
Help
Entry
111973416 CDS
T05762
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111973416
00535 Proteoglycans [BR:
salp00535
]
111973416
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111973416
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111973416
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
111973416
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111973416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
3keto-disac_hyd
DUF1554
DUF959
Motif
Other DBs
NCBI-GeneID:
111973416
NCBI-ProteinID:
XP_023856553
LinkDB
All DBs
Position
LG2:5374998..5539530
Genome browser
AA seq
1475 aa
AA seq
DB search
MDCRIGFQLGVSFLLVLLVGRSEALWFSWGSTDGTTEAPTLDNEGSGNPVASGKSPKPDN
VGEDGAEIIDVASGIRKFVQTWDQNSKATETHKLTTVRSQARNERPMSTSRGSKPDESGV
SLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPSPFYRDFSLLFNLKPQS
TNGGVIFSVTDPSQQIMYVGVKLSPVKANRQNVIFYYTEPDSQESYVAATFPVHNLADQW
NRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMELESGAGVFVGQAGGADPNKFLGVIG
ELRVVGDPRAAERQCEEEGDDSDAASGDGGSGDERIPDGKKKGSGTSIWDAKVRKYERVE
DVRLTVTTTPTSSRPIQQPPVTRKQPEVSPKKERDQGGSRGEKGDRGEKGDRGPLGSKGD
SGSESGTRGGARGEKGVFGEKGMKGKAGFGYPGSKGDPGPVGPPGPPGLPGPAAEVVSRG
DGSVVQTVAGPRGPAGPPGTSGPEGPAGADGEPGDPGEDGSQGPVGPPGFPGIPGDPGLT
GEKGDRGEGQPGPRGPPGPPGQPAATRHDRPTFADMEGSGFPDLETLRGLPGLPGPPGLP
GAPGTSVVGTGVSGLFGPKGPPGLDGAPGQPGLHGPPGADGRPGAAGPGGEKGDPGELGL
PGAVGAKGAQGLNGIPGQPGQGGLAGLPGPMGPLGQPGPPGPPGPSYRVGFDDMEGSGVG
VANGVPGARGPEGQQGPPGIPGLPGKSGFPGIPGEKGSEGPRGSDGQPGLDGFPGPNGQK
GDIGDRGERGESGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGAVGGAGPQGQAGFPGPIG
PKGDMGDPGQPSYGVKGEKGESGSIIGPDGNTLYLGRLSGEKGDRGPAGPVGPPGQYGSP
GIKGEFGMPGRPGRPGVNGYKGEKGEPTTGAGFSYPGVPGPPGPPGPPGPAVPVDRFNGY
DASRNYPVTKGEKGDFGAQGLPGPPGVASNFDIFTFKNDLKGEHGDTGVKGEKGEPSGGY
YDPRFGRQQGPPGPPGNPGLMGPKGDSITGPPGPQGPPGSSGIGYDGRPGNPGPPGPPGP
TGSHSLPGAYRPTHPISIPGPPGPAGPPGIPGHTSGVTVLRSYDTMIATARRQSEGTLIY
VVDKADLYIRVRNGFRQIMLSDYSPFYRDLDNEVAAVQPPPVVNYPQSQDHSANNGAEQF
SHGGAATHPVVPPPRQPIEIPRPAQPNNRDPRDPPQYDPRYPSQTDPRYPPQTDGRYSPV
QPENRYPSQPERRYHITPQRQPVPPPVPQPAGHVHTSGPGLHLIALNTPQVGNMRGIRGA
DFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPILNLKDHVLFNSWESLFSK
TEGRMEENAPIYSFDGRDILRDSAWPEKLVWHGSSSEGHRQTDNYCETWRAGDRAVTGLA
SSLQTGQLLQQLPSSCSSSYIVLCIENSYLSHSKK
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaggattggattccagctgggtgtctcttttttactggtactcttggtgggc
cgtagtgaggcgttgtggttttcctggggcagtacagacggcaccactgaggccccaacg
ctggacaatgagggatctgggaaccctgtggctagcgggaaatcgccaaagccggacaac
gttggagaagatggggcagagatcattgacgtagctagtggaatacgtaagtttgtgcaa
acttgggaccagaattcgaaggccacggagacccataagctgaccactgtgaggtcacaa
gccaggaatgagcgcccaatgtccacgtcgaggggaagtaaacctgatgaaagcggtgtc
tccctcctgcagctgatcggggaccctcccccggacgagatcaccaagatctatggcccc
gacaacagccccggctacgtgttcggtcccgacgctaacacgggccagctggcacgcgcc
catcttcccagccccttttaccgggacttctccctcctcttcaacctgaagccccagtcc
accaatggtggcgttatcttctcggtcacggacccgtcgcagcagatcatgtatgtgggt
gtcaagctgtcgcccgtgaaggcaaaccggcagaacgtaatcttctactatacggagccc
gactcgcaggagtcgtacgtggcggccaccttccccgtgcacaatctggctgaccagtgg
aaccgcttctccatctccgtgctggacgacaaggtcaccttctacatcaactgcgacgac
cagccccaggtggtgcgcttcgagaggtccccagacgagatggagctggagtctggagcc
ggggtgtttgtgggccaagctggtggggccgatcccaataagttcctgggggtgatcggg
gagctgagggtcgtcggagaccctcgggccgctgaaagacagtgtgaagaggaaggggat
gactctgatgcggcttcaggagacggcggaagcggtgacgaaaggataccggacgggaag
aagaaaggatcgggtacatccatatgggacgcaaaggtacgaaaatacgagagggtggaa
gatgtcagactgacagttacgactactccaacgtcatcacgccccattcaacagcccccg
gtgacccggaaacaaccagaggtgtctcccaagaaagagagggaccagggtggatctaga
ggagagaagggcgacagaggagagaaaggagacagaggtcctcttggttcaaagggagat
tctggttccgagtcaggcacacgaggaggggcacgtggagagaagggagtgtttggagaa
aagggaatgaagggaaaagcaggcttcggctaccccggctcaaagggtgaccccggcccc
gttggtccccccggaccacccggcctcccagggccagcagcagaggtggtatcacgtggc
gacggctccgtggttcagacggtggcgggtccaagaggaccagctgggcctcctggcacc
tccggccctgagggacccgcaggagctgacggagagcctggtgatccaggtgaagatgga
tctcaaggccctgttggaccgccaggcttccctggaatcccaggagaccccgggctcaca
ggagagaagggtgaccgtggtgagggccagccaggccccaggggacctccagggcccccc
ggacaaccagcggcaaccagacacgaccggccgacctttgcagacatggagggctctggc
ttccctgacttggagacacttcggggactgcctggtttgcctggccctcctggcctcccc
ggggccccaggtacctctgttgttgggacaggggtctctggcttatttggccccaaaggt
cctccaggactggatggtgctcctggtcaaccgggcttacacggcccgcctggtgctgat
ggtcgcccaggagctgcagggcccgggggagagaagggtgatccaggtgaactcggtctt
ccaggagcagtcggagcgaagggcgcacagggattgaatggcattcccggtcaaccagga
cagggtggattggctggcctccctggaccaatgggaccactgggacaacccgggccacca
ggaccccccggaccaagctatcgcgttggttttgatgacatggaaggctctggcgtggga
gtggccaatggggttcctggagccagagggccagaggggcagcagggtcctcctggcatc
cctggcctaccaggcaagtctggtttccctggtattcctggtgagaagggaagtgaagga
ccacggggaagcgatggccaacctgggttggacggtttccctggacctaatggacaaaag
ggggacattggggacagaggagaaaggggcgaatctggtcgcgatggaaacggacagcct
ggaccaccaggcccacctggcccaccaggacaaatcatctaccagacctccagcagttat
gatggtgccgttggaggcgccgggccccagggccaagctggattccctggcccgattgga
ccaaagggcgacatgggagatccaggccaacccagttatggagtcaagggcgagaagggc
gagtctggctcaatcattgggcctgatgggaatactttgtacctgggaagattgtcgggt
gagaagggcgacagaggacctgccggacccgtcgggcctcctgggcagtatggttctcct
gggataaagggtgaatttggaatgcccggaagacctggtcgtcctggtgtgaacggatac
aagggtgaaaaaggagagccaaccacaggagctggatttagctacccaggtgtcccaggt
ccacctgggccgccgggaccacctgggccagctgtgcccgtggaccgcttcaatggatat
gacgcctcaaggaattatccagtgacaaagggggagaaaggtgatttcggagctcaaggt
ctcccaggaccgccaggtgtggcctctaacttcgacatttttacattcaagaatgacctg
aaaggagagcacggcgatacaggcgtgaagggggagaaaggagagccaagtggtggctat
tatgacccccgttttggaaggcaacaaggcccgccaggaccccctggaaacccaggactt
atgggtccaaagggagattccatcacgggcccccctggtccacagggcccaccaggctcc
tcagggattggctacgacggtcgtccaggaaacccaggcccaccggggcctcccgggccc
acaggctcccactcactaccaggggcctacagacctacccaccccattagtattccaggc
ccccccggacctgctggaccacctggaattcctggtcacacctcaggggtgacagttttg
aggtcatacgacaccatgattgctactgcaaggcgccagtcggagggcacgctcatctac
gttgtcgacaaagcagatctctacatccgagtccgcaatggattcagacaaatcatgctc
agtgactacagtcccttctacagagatctggacaacgaagtagcggcagtccagcctccc
cctgtcgtcaattacccccaatcccaggaccactcggccaacaatggagctgaacaattc
tcccacggcggtgctgccacccaccccgtcgtgcctcctcctcgccagcctattgagatc
cccaggcccgcccaacccaacaatcgcgaccccagagacccccctcagtatgatcccaga
tacccctctcagactgaccctaggtacccccctcagacagatggccgctacagccctgtg
cagcctgagaacaggtatccctcccagcccgaaagacgatatcacatcaccccccagaga
caacctgttccccctccagttccccagcctgccggtcacgtccacacatcagggccagga
ctccacctgatcgccctgaacactccccaagtgggcaacatgcggggcattcgaggggca
gacttcctgtgtttccagcaagctcgtgcagtgggcctgaaaggcaccttcagggctttc
ttgtcctccaagctccaggacctctacagcatcgttcgcaagtccgacagagacagcctc
cccatcttaaacctcaaggaccatgtgctatttaatagctgggagtcattgttcagtaag
actgaggggaggatggaggaaaatgcaccaatctattcctttgacggcagagatatcctc
agggacagtgcatggccagagaaattggtctggcacggctctagcagcgagggtcaccgc
cagacagataactactgtgagacatggagggcaggagaccgtgcagtgactggcctagcg
tcctcactgcagaccggccagctcctacaacagttgcccagtagctgctctagctcctac
atagtgctgtgtatcgagaacagctatctctctcattccaaaaaataa
DBGET
integrated database retrieval system
