Salvelinus sp. IW2-2015 (Arctic char): 111973670
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Entry
111973670 CDS
T05762
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111973670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salp03009
]
111973670
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
RNases
111973670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Motif
Other DBs
NCBI-GeneID:
111973670
NCBI-ProteinID:
XP_023856808
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All DBs
Position
LG15:complement(13254359..13263946)
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AA seq
1195 aa
AA seq
DB search
MLSSIGFFAEIDCPFFRRDHCKRPHCLYKHDKDERGMFDNTLYGSPVTAAGVWKTHSTSI
NGAPQVNEAKDPCLLELERINKEIETVKNEVEKEQRRLSRYQTVQVDSERTGSKKVLIAK
SETPGKDLNGNSVKSKHRQSTTVYSPARRKYVVDNSKPRTDLEYDPLSNFSASLRSSGCF
EYKPGNEQKVRSGQGVKRMRENVCKEDQTKPPSQEFTASPASSNKLVDDSEEEEGVLIID
IPPLESDIKKCRAQKPCKITTNQSQEIKEEDHTVFVPTVAHAPLSIPLPVSTPGPEVVEV
LSPPAVSEIVKDDNLNTYGLSSVSASRENEGEPSAESVFDDLSKCLENLRSESERIVCYQ
EAEATAESNCVPEPVSLKMSLSSLQTRHHNEPVTTDVNLLMAEPGLLERELAYNCVENSN
HLQPNEVSYGHISSLPHNVLVPPSVSSPHKLPIETQRSEQPVAQSSAQSYWSPVQSVSSV
PCLQKIPGQAPGLDFALPSPVPVANFVEQAATTVGFTQCQLLYGPTTSGTNGVELQSAPF
EQPTVEAMNEHIVIDSSSEELEYSELSDSDTMEECYRIFMEEANKGDEGSTDQACTPVGA
VDVETPGLAVKPKPLPGPRKRVAHVSRYTEPPVGKSKAQVIVPFRGGAPQLSNPSKIHQL
QQRASVLSAALKGGQAFISSNSQRKMVMLPSPAHQASHQATHHPVQYLIHQPTHQTTMQN
SCVNVIPVGTAIQVGNNLHFILXEGSYTLPITSANSPVTPVHTPVHTPVTPVPVQPQPTA
YIPAKPIPTKRKAKTRPEVSAKVPHDVRQRYVNLFVEEFLKTSVTVQDAFEKALAEEKTV
YDRSINKLKYLSVAVNALKRLKNQSTVSVKAGNETNVQLSKGNIPLNEKALWANGDVALY
DSLKEHILSEEILTENNYPLQHPEKSGSAILYREDYKKAITDSLKRICCRCGATYSVNQV
GKHTRKEECNYHYGKGVEKKVPGGVETRYSCCEGVAGCPGCQVFKLHVHDAVSLDGFVST
LPRPASDKGCPGVFSVDCEMCYTTQGLELARVTVVNSSLQVIYDTFVKPDNDVIDYNTRF
SGINEADVKGTSSSIRDVQETLLSFVSAETILIGYGLESDLCALKLLHGTVVDTSVSFPH
RLGLPHKMTLHNLTADYLRRIIQESVGGHDSAEDAAACMELMLWKVKEDGKTKRW
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcttccattgggttcttcgctgaaatagactgtccatttttcagacgtgaccac
tgtaagcggccccactgtctgtacaagcatgacaaagacgagcgaggaatgtttgacaac
accctgtatggctcaccggtaacagcagcaggtgtttggaaaactcattccacttccatc
aatggagctccacaggtcaatgaagccaaagacccttgccttttggagttggagaggatc
aacaaagaaattgagactgtgaagaatgaggttgagaaggagcaaaggagattatctcgt
taccaaactgtgcaggtggacagtgaaagaacagggtccaagaaagtcttgattgccaaa
tctgaaacaccaggtaaagatctgaatggaaatagcgtaaagtctaaacacaggcagtca
actacagtctattctcctgcccggaggaagtatgtggttgacaattccaaacccaggact
gatttggaatatgaccccttgtccaacttctcagcttctttgcgatctagtggttgtttt
gagtacaaaccaggtaatgagcagaaagtgagaagtgggcaaggtgtgaagaggatgaga
gagaatgtttgtaaggaggaccaaactaagccaccatctcaagagttcactgcctcacca
gctagtagtaacaagttagttgatgactctgaagaagaagaaggggtcctcatcattgat
attccacctctggagagcgatataaagaagtgtcgggctcagaagccctgtaagatcacc
acaaaccaatcacaggaaatcaaagaggaagaccacactgtttttgttcctactgtggct
catgctccacttagtattccacttcctgtgtccactcctggtcctgaagtagtcgaagtc
ctatccccacctgcagtgtctgagattgtgaaagatgataacctcaacacttatggccta
tctagtgtttccgctagtcgggaaaatgaaggtgaaccgagtgctgagagtgtattcgat
gacttgtccaaatgcttggaaaacctgcggagtgaaagtgagagaatagtttgttaccaa
gaggctgaagccactgcggaaagcaattgtgtcccagaacctgtgtctctcaaaatgagt
ctatcatccttacagacacgtcaccataatgagccagttacgactgatgtcaacttactg
atggcagaacctggattgcttgaacgtgagcttgcctacaactgtgttgagaacagtaac
catcttcaacccaatgaagtctcatatggacatatatcttcactacctcataatgtttta
gtccctccctctgtctcctccccccataaactccccattgagacccagagaagtgagcag
ccagtagcacagagctctgctcagagttactggtcacctgtacaaagtgtatcatcagtg
ccatgtctgcagaaaataccaggccaagcgccagggcttgattttgccctgcctagtcca
gttccggtagcaaattttgtagagcaagcggccactaccgtgggtttcacccaatgccag
ctgttatatgggccaactacgtcagggactaatggagtagaattacaatctgctcctttt
gagcagcctactgtggaagcaatgaatgaacacattgttattgattcaagttctgaggag
ctcgagtattcagagttatctgatagtgacacaatggaggaatgctatcgtatcttcatg
gaggaagccaacaagggtgatgagggatcgacagaccaggcttgtacacctgtaggagct
gtggatgtggagacaccagggttagcagtgaaacccaaaccgttgccaggacccaggaag
agggtggcccatgtgtccagatatactgagccaccggtgggcaaaagcaaagcccaggtg
atcgttcctttccgaggaggagccccccagttgtccaacccctctaagatccatcaactg
cagcagagggcctccgttttgtccgctgctctgaaaggaggccaggcgttcatctcctcc
aactcacagagaaaaatggtgatgctgccttctcctgctcatcaggccagtcatcaggcc
acccaccatccagttcaatacctcattcaccagccaactcaccaaactactatgcaaaac
tcctgtgtgaacgtcatacctgtgggaacagccatccaggtgggcaacaacctgcatttc
atcctcycagagggaagctacactctgcccatcacttcagctaattctccagtcacccca
gtccataccccagtccatactccagttacccctgttcctgtacaacctcagcctactgcc
tatatccctgctaagcccattcctaccaaacgaaaagccaagacgcgtcctgaggtcagc
gccaaagtcccacatgatgtacggcagcgctatgtaaacctgtttgtagaggaattcctc
aaaacgtccgtcactgtacaagatgcttttgaaaaggctcttgctgaggagaagactgtg
tatgatcgcagcatcaacaaactcaagtatctgagtgttgcagtgaatgcactgaagagg
ctgaagaaccagagcaccgtctctgtcaaagctggaaatgaaactaatgtccagctgtcc
aaaggaaatattccactcaatgaaaaagcactttgggcaaatggagatgttgcattgtat
gacagtttgaaggagcacattctgtcagaggagatattgacggagaataactatcctctt
cagcacccagagaaatctggcagtgccatactgtaccgtgaagactataaaaaggcaatc
actgattctttgaagaggatttgctgtcggtgtggggccacttactctgtgaaccaagtg
ggaaagcacactcgcaaggaggagtgcaactaccactatgggaaaggagttgagaagaag
gttccaggtggagtggaaacccgctacagctgctgtgaaggtgtggctgggtgccctgga
tgccaagtcttcaagctgcatgtccatgatgcagttagcctggatggctttgtcagtacc
cttcctaggcctgcctctgacaagggatgcccgggtgtgttctcagtcgactgtgaaatg
tgctataccactcaaggtctagagctggccagagtgactgttgttaactccagtttgcag
gtcatctatgacacctttgtgaaacctgataatgacgtcattgactacaacaccaggttt
tcaggcatcaatgaagctgatgtgaaaggaacaagctcgtccatccgagacgttcaggag
actctactgagctttgtcagtgcagagactatactgatcggctacggcttggaatctgac
ctctgtgcactgaagctgctccatggcaccgtggtggacacctctgtgtcgttcccccac
cgcctgggcctgcctcataagatgaccctccacaatctgacagcagactacctcaggagg
atcatccaggagagtgtgggtggccatgactcagcagaagatgctgctgcctgtatggag
ctcatgctgtggaaggtcaaagaagatggcaaaactaaacgatggtga
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