Salvelinus sp. IW2-2015 (Arctic char): 111973719
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Entry
111973719 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111973719
Membrane trafficking [BR:
salp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
111973719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
DUF5764
Motif
Other DBs
NCBI-GeneID:
111973719
NCBI-ProteinID:
XP_023856876
LinkDB
All DBs
Position
LG15:complement(11125303..11207988)
Genome browser
AA seq
3238 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPKCPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFRPITANAKLSMNPRSDVNFSSPKIDLVVNLREVAVELNRPQYISILE
LLGSVDMMSRNLPYRKYRPQFHVHTNAYIWWQYVITGIMEVDVKPRLHMWSWQRIHRHRQ
TVKRYRALYKSKITNKKPTEKLLREVEETERTLDIFNITLARQQAEMEASKAGLRIFRPG
VKVEEESQGWLGWMWSGWSGDDGAKSKEVKTGAFGELMTPAEKAKLYIAIGYSEVAVNHN
LPKNFEDIKIHFHMKRMSFSMKDNKDQNEILKVTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVKGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLHVESQPLEIIYDAV
TVNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGSRTIQDIMSQAYDSFNIKLSSL
QFLYSKPDGDWRKARKLKQSALHILEPVDVKVVFSRAMVVTDSRNAQVRASGEGWWAMPL
LSLRISAVKVAAVLSCINSIPLPESRPAPRHQHTLLLPQAPKQSYTPQLTPRQPTMAELR
NSLIWESGSEEDLFYDAPSSPIGDSAFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFL
MTFEINKLSVQLCRLSRGQEVTVLHLDVERLGTELKIRSFDMTSNTFLREICLECSEYMD
SEEKKVHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQSVKVNFSSLDVHLHTEA
LLNAMNFLNSLLPPTKEAVPSKEELPTIPEEDEGEGEEGEGEEGEKEESAVAKRTSSKKS
KFEDVVNLHIRADLNCLKVFIRGQSHMIAEIRIEGLVSEVLMRRKAVEVLANLKNIVILD
CDKEALYKQCVSIADKEVFAFRMVNHTDATEGDAYLDMGKVDTSITLTVGCIQVIFLNKF
VSSILAFINNFQAAKEALAEVTVHAAEKAATGVMELAERSTRISLDVDFKAPLVFLPQSS
SSTNVTVADLGMVTVKNCFALVDSQTHVKIPPIIDTMTVGLSDLKMYRTTFEKGRFQGEI
QVLKPVNLDLSIQRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTVVLRTLGENMSETS
DAASPRPPPSTVDRSDTATTKGSQGTGGNIVVTAAVVETQKSTKLKNTLKVDFKFDSMTL
VLYSPNGTEVQVLDSRDDQLMLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRRRV
KNITARMMAIRPSAERNVMVEVNYNQGREGTSLETVVQDVYLCASMEFLLTVADIFLKAS
QQGFSSAAPKNSSTKPTVTATAASKEPAPVAVKLEMNVLVKNPEIVFVADLTRADAPALV
MTMECELVMKSNPDGQLMTAVVKDLKVVACPFLREKRRNKETTVLQPCQVFFKSTQSSTS
PQAMEVSIKALTLKVSPIIINTVITIQSVLSPAGADMPQSELESPVPPDLWERRSWRDLK
LWFLEEEGKDEDAQSLVRLIPQGESLQVAISSICLTLEAGVGHRTVPMLLAKSSFHGDVK
NWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDEIRDGFRSWTLGLKMKKKPVKYSGI
SDEVDYSIPDYKTIISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSESFQEDEAPF
VVKNRLGLTVSVVYSEMFCPLGREATENRVELQNGDSVNMDYRRTTTHSDQFSAMTSLVA
KDYYIQPTPAGHTSASVIPLIKVGRGMYSVMHKVSGVTRFLVCQIYSVQGSKHIKIRSPF
QIINHFSIPFRVMEGSTCLGMSLPTEEFCVPLDSYRSKLSLQPVTEGDNQYDSSEGFSYE
SVSQQPGVRVQQTCHRHGNSASVLMVNIVPLKDTVTSQHMGVAGEHFDEPYILHLWPSVL
LRNLLPYPITYRLQDSEEPALITLMDGHSAELHTAVMDLSSLELRLLNYLGQDWKAHYGL
RGDQDEITFIVFHSLRDEEEEVRLGEGGERKRAELDIAVHVKYDAGLTEVAIHSPYWMVN
KTGRLLQYKADDIHRKHAMDYDMPLLFSFKPRNFLHNNKVRLMISDSELSDDFSLDTVGS
YGEVKCKGRLKDYLIGVKIDPSSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDHWTKAR
PHQAAIPFWPEKDSKKLKIKVEGCQSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDH
SIIIRFSDYHDGAAPFLIINHTQEQTLEFYQSSQKEKDKLSPGKAVYYTWAEPTGSRSLA
WQCGSYSGELKSEEDLRLDVNEEGKLYLISFYEGLQRVALFTEDRRIYKLLCESEKAELA
EQEIILSLQDVGVSLVNNSSHQEVSFIGITSSDVVWEFKPKKKSRWKRLSFKYAALLETH
FREYTESGSVDNAILDLDSNFQVSLTPNRQDMRMMKPYDAPIRRNFLPGVKVEYSVSARQ
SAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSVTMDSEPKPLTDISIVTRAAGHSDISR
IKYFMVLIQEMDLKLDLGFLYAILDLFTPENASVMTSEQMVELFEKDIEYLKTELNNISA
ADTSPISLYEYFHISPIKLHLSLSLSSGGEDGNKEKRETEVIPVQSLNLLLKSIGATLTD
VQDVVFKLAYFELTFQFRTRQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLS
AGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTM
DEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTMPIRGAQKEGAAGFFKG
VGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREG
VGSQMLQKIENGQFAKYRYFAHAKVNESDFLMITKSGIFFVTKGTFGQLTCEWQYLFDEF
TKKPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFKSPEIAEWVLTKLEDARESLHKY
NT seq
9717 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacacctcacaactcaagctcgggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagccgga
catataggacgcttggagctgaagattccatggaagaatctgtacacccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagcttcaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagaaaaccccgcacttgagaaacaagacacctttgtg
gagaaactggtgacacaggtgatcaagaaccttcaggtgaagatctccaacatccatatc
cgctatgaggatgacgtcaccaatcccaaatgcccattgtcatttggaatgtctctacag
aacctcagccttcagacagcagatgagaactggaaaccttgtcttctgaatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcctactggaacgtgaactca
atgctgtactccaatcacatgccagacgaggccctgcgatgcctccagaacagcatggat
atctacagttccacccccatgaaacacgatttcatttttcgtccgataacagccaatgcg
aagctgagcatgaacccccggtcagacgtaaacttctcttcacccaagatagacttggta
gtcaatctgagagaggtggccgtggagctgaacaggccacagtatatcagcattctggag
ctcctgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccggccgcaa
ttccacgtgcacaccaacgcctacatatggtggcagtatgtgattacgggcatcatggag
gtggacgtgaagccacggctgcacatgtggtcgtggcagcgcatccaccgccaccggcag
acagtcaagcgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaagtggaggagactgagcggactctggatatttttaacatcacgctg
gccaggcagcaagctgagatggaggcgagcaaggcgggtctgcgtatctttcgtccgggg
gtgaaggtggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gatgacggcgccaagtccaaggaggtcaaaactggagcttttggtgagcttatgactcct
gccgagaaggccaaactctacatcgccattggctacagtgaggtagctgtcaatcacaac
ctgccaaagaactttgaggacattaagatacattttcacatgaagaggatgtctttctca
atgaaagacaacaaggatcagaatgaaatcctcaaggtcacagttgaagacctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagcttagtctgttt
gaggtgaaaggactggccaataatcggccggcgcccacgctgctgtcgtcgaggaaggct
gccacggtaacagggacccccctgcttgacatcctgtttgagaccaaccctctggatgag
agtgctgaccagcggctccacgtcgagtcccagcctctggagatcatctatgacgctgtg
acggtgaacagcatgtctgcgttcttcttgccgcctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggagcagttccgagaccgtacctccacagggctgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgtgccccaaaccggcttctacgactccacccagaacctcatgctattggacctgggt
cacttcaaggtgtctagtctgagcagaaaggggctaccccagctctctgtagggagcagg
actatacaggacatcatgtcccaagcctacgacagcttcaacatcaagctcagcagccta
cagttcctctacagcaaaccagacggggactggaggaaagcccgtaaactgaagcaatcg
gccctccacatcctggagcctgttgatgtcaaggtggtgttcagcagagccatggtggtc
acggactcacgcaatgcccaagtaagagcgagtggagaggggtggtgggcgatgcctctc
ttgtctctgaggatctctgctgttaaggtggcggccgtgctgagctgtattaacagcatc
ccgctgccagagagcaggccggccccgcggcaccaacacacactcttacttccgcaggct
ccaaagcagtcgtacacccctcagctaacccccaggcaaccaaccatggctgaactgcgc
aactccctcatatgggaatcaggctcagaggaggacctgttctacgatgctcccagctct
cctataggcgacagtgcgttcttccccgacaacatgcccagccccctgcagcgctccgac
tcggtcaagaggagaggtctggtcaagaaagatcccaagaagaacatgacagagttcctc
atgacgtttgagatcaacaagctgtctgttcagctgtgtcgtctgtctagaggccaggag
gtcacagtgttacacctggatgtcgagcgtctcggcaccgagctaaagattcgctccttc
gacatgacatctaacacctttctacgcgagatctgcctagagtgctcagagtatatggat
tcagaggagaagaaagtgcacctgatcaccactctagacaacacagaggaggacctcctc
acattggagtacactaaggctgataagaacgggccagaattcaagtctcagtacaagaac
actgaacaatcagtaaaggtgaacttctcatctctggatgtacacctgcacacggaggct
ttgctcaacgccatgaacttcctgaacagcctcctccccccgaccaaggaggcggtgcct
agcaaggaggagctgcccacaatcccagaggaggacgagggagagggggaggagggagag
ggggaggagggcgagaaggaggaatcggccgtggcaaaaagaacatcttctaagaagtca
aagtttgaggatgtggtgaatttgcacatcagagctgatctcaactgtctgaaggttttc
atccgaggccagagccacatgatagcagagatccgcattgagggcctggtgtcggaggtg
ctgatgaggagaaaggcagtggaggttctggccaacctgaagaacatagtcatcctggac
tgtgataaggaggcactgtacaagcagtgtgtgtccatagctgataaggaggtgtttgct
ttccgtatggtgaaccacacggacgccactgagggcgatgcctatctagacatgggtaaa
gtggataccagcatcaccctgacggtgggctgcatccaggtcatcttcctcaacaagttt
gtatcctctatcctggccttcatcaacaatttccaggcggccaaggaggccctggctgag
gtgacggtgcatgcagcggaaaaggcagccacgggggtgatggagctggctgagcgcagc
acgcgcatctctctggatgtagacttcaaagctcctcttgtcttcctgccgcagtcgtcc
tcctccaccaacgtcactgtggctgacctcggtatggtcacggtcaagaactgcttcgcc
ttggtcgactcccagacgcatgtcaagatccctcccatcatcgacaccatgaccgtgggc
ctcagtgacctgaagatgtacagaaccacctttgagaaggggagatttcagggggagatc
caggttctgaagccggtcaacctggacctgtccatccagaggaacctgtcagcctcctgg
taccacagcatccctgacataaagatcactgcccacctcaaacctatgaatctgatcctg
agtcaggatgacatgacggtggtgttgaggactctgggtgagaacatgtcagagacgtca
gacgctgcttcccctcgtcctcctccgtctacagtggaccgctccgacactgccactacc
aaaggctcgcagggcacaggaggcaacatagtggtaactgctgcagtggtcgagacccag
aagagcactaagctgaagaacacactcaaagtagacttcaagtttgactccatgactctg
gttctgtacagccccaatgggactgaggtgcaggtgttggactccagggatgatcagctg
atgctggctgagttcaccttgggaactatctctacatctgtccacatgttctcagacgga
tccatgaaggcctccgtcaaactcacagactgcctgctagacgacaagagacgcagagtc
aagaatatcactgccaggatgatggcgattcgtccgagcgctgagagaaacgtgatggtg
gaggtgaactacaatcaggggcgtgaaggcacctctctggagacggtggtgcaggatgtc
tacctctgtgccagcatggagttcctgctcaccgtggccgacatcttcctcaaggccagc
caacagggtttctcctcagccgcccccaagaacagcagcactaaacccacagttacagcc
accgccgcttccaaggaacctgctccagtggcagtcaagttggagatgaatgttctggtg
aagaacccagagattgtctttgtggctgacctgacgcgtgccgacgccccagccctggtc
atgaccatggagtgcgagctggtgatgaagagcaacccggatggtcagctgatgacggca
gtggtcaaggacctgaaggtggtggcctgccccttcctgagggagaagaggaggaacaag
gagaccactgtgctgcagccctgccaggtgttcttcaagagcacacagtcctccacctcc
ccgcaggccatggaggtctccatcaaggcactgacactgaaggtgtcgcccatcatcatc
aacacagtgatcaccatccagtcggtgctgagcccggccggtgcagacatgccccagtcg
gagctggagagccctgtgcccccagacctgtgggagcgccggtcctggcgggatctcaag
ctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtccggctgatt
ccccagggtgagtccctgcaggtggccatttcctccatctgcctgaccctggaggctggg
gtgggccaccggaccgtccccatgctgctggccaagtcctccttccatggggacgtcaag
aactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttcaac
gaggtgatgggggtgtgggagcctctgctggagcccctagaggacgagatcagagacggc
ttcagatcctggactctgggattaaagatgaagaagaagccagtaaagtactccggtata
tcagatgaagtggactacagcatcccagactacaagactatcatcagcatcagcagcaag
gaccagctcaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggcacg
gcctttgcggaggcggccaagcagacatcagagagtttccaggaggatgaggcgccgttc
gtggtgaagaaccgtctgggtctgactgtgtcagtggtgtacagtgagatgttctgcccc
ctgggccgtgaggccacagagaaccgtgtagagctgcagaacggagacagtgtcaacatg
gactaccgtcgcaccaccacccactcagaccagttctctgccatgacctcgctggtggcc
aaggactactacatacagcccaccccggcaggccacacttcagccagcgtgattccgttg
atcaaagtggggcgtggcatgtacagtgtcatgcacaaagtctctggggtcacccgcttc
ctggtctgtcagatctactctgtgcagggaagcaagcacatcaagatccgctctcccttc
cagatcataaaccacttttccatcccgttcagagtgatggagggctccacgtgtctgggg
atgtcattacctacagaggagttctgcgtgcctctcgactcctacaggtcaaagttgagc
ctgcagccggtaaccgaaggagacaatcaatacgattcttccgagggcttcagctacgag
tcagtgagccagcagcctggcgtacgtgtacagcagacctgtcatcgacatggcaacagc
gccagcgtgttaatggtcaacatcgtacctctgaaagacacagtgacatcacaacacatg
ggagtggccggggagcactttgatgagccctacatcctgcacctgtggccctccgtcctg
ctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagagcccgcc
ctcatcacactgatggacggccactcagcagagcttcacaccgccgtcatggacctgtca
agcctggaactccgcctcctcaactacctggggcaggattggaaggcccactatggtctc
cgtggcgaccaggacgagatcaccttcattgtgttccactccctgcgtgatgaagaggag
gaggttaggttaggggagggtggagaaaggaagcgggcagagctggacattgcggtgcat
gtgaagtacgatgcgggcctgactgaggtggccatccattctccctactggatggtgaac
aagacgggtcgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatggac
tatgacatgcccctgctcttctccttcaagccacgcaactttctgcacaacaacaaggtg
cggctgatgatctcggacagcgagctgtctgatgatttctccctggataccgtgggtagc
tatggtgaagtgaagtgcaaggggaggctcaaagattacctgatcggggtgaagatcgac
cccagcagtttcagcctgacccgtatcgtgagctttgtgccgtactacctgttggtgaac
aggaccaagcatgtgatctgggtgggagaggagggccaggaccactggaccaaggccaga
ccacaccaggcagccatcccattctggcccgagaaggactccaagaagctcaaaatcaag
gtagaaggctgtcagtcaacccctcaaaccatggacttcaccaaaccagaaaactgcctg
ttgctgcacctcgacaacactctgggcggagtcattgtggacgtgaacctatcagaccac
tcgatcattatccgtttttcggactaccacgatggagccgcccccttcctcatcatcaac
cacacccaggagcagacgctggagttctaccagagcagtcagaaggagaaggacaagctg
agcccggggaaggctgtgtactatacctgggctgagcccaccgggtcacgctccctggcc
tggcagtgtggcagctacagtggcgagctgaagagtgaagaggacctgcggttggacgtg
aatgaggagggtaagctgtacctcatctcattctacgagggcctccagcgggtggcgctg
ttcaccgaggacaggcggatctacaagctgctgtgtgagagtgagaaggccgagctggct
gaacaggagatcatcctctccctgcaagacgttggtgtctccctggtcaacaacagcagc
caccaggaggtgtccttcattggcattaccagttcagatgtggtgtgggagttcaagcca
aagaagaagtctcgctggaaacgcctgagttttaaatatgcagcgctgctggagacccac
ttcagagagtacaccgagagtggatcagtggacaacgccatcttagacctggatagcaac
ttccaggtgtctctgacgccaaataggcaagacatgaggatgatgaagccatatgatgct
ccaatcaggaggaacttccttccgggggtgaaggtggagtacagcgtatcggcccgccag
agtgcttaccgtgtccagatcaaccgcatacagatccagaatcagctgcctggagcaatc
tttccctatgtcttctacccaataaaactaccaaagtctgtcaccatggactcagagccc
aaacctctgaccgacatcagcattgttaccagggcagccggacactcagatatctcccgc
atcaagtatttcatggtgctgatccaggagatggacttgaagttggacctgggtttcctc
tacgccatcttggatctgttcaccccggagaacgccagcgtgatgacatcagagcagatg
gtggagttgtttgagaaggacattgagtatctgaagactgagctgaacaacatctcagcc
gctgacacgtcccctatcagtctctatgagtacttccacatctctcccatcaagttgcac
ctgagtttgtctttgagttctggaggagaggatggtaataaggagaagagggagaccgag
gtcattcctgtccaatccctcaatctgctgctgaagagcatcggagcaaccctcaccgat
gtgcaggacgtcgtcttcaaattggcctatttcgagctgacattccagtttcgcactcgc
cagcaactacaatgggaggtcatcagacactactcgaaacaggcgataaagcagatgtat
gtgctggtattgggcttggacgtgctgggaaacccctttggactgatccgaggtctgtct
gcgggagtggaggctttcttctatgagccctatcagggagctatccagggaccagaggag
tttgtggagggtatggcgctgggggtgaaggcactggttggaggagcagtggggggcatt
gcgggtgctgcctccaggataacaggcgccatggcgaagggtgtggctgccatgacgatg
gatgaggaataccagcagaagagacgagaggctatgaacaagcagcccagcggcctgaga
gagggcctgactcgtggaggcaaaggactggtctctggcttcgtcagtgggatcacaggg
atcgtcaccatgcccattagaggtgctcagaaggagggtgcggcaggcttctttaagggt
gtcgggaaggggctggtgggggctgtggccagacccacaggaggtatcatcgacatggcc
agcagcactttccagggcatcaagagggcggctgagacgtcccaggatgtggagagtctg
cgtccgcctcgcttcattcacgaggacggggtcatccgaccatataaggagagagaaggc
gttggcagccagatgctacagaaaattgagaatggacagttcgccaagtacagatacttt
gctcacgccaaagtaaatgagtcagatttcttgatgatcaccaaaagtggaatctttttc
gtgaccaaaggcacatttgggcagcttacctgtgagtggcagtatctatttgacgagttc
accaagaagcccatgatcgtggaggggaggaggcttcggatagaggcaaaggagagagta
aagtctgtgttccatgccaaagagtttgggaagattataaacttcaaaagtccagaaata
gccgagtgggttcttaccaagctggaggacgccagggagagtctacacaaatactga
DBGET
integrated database retrieval system
