Salvelinus sp. IW2-2015 (Arctic char): 111973737
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Entry
111973737 CDS
T05762
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111973737
03036 Chromosome and associated proteins [BR:
salp03036
]
111973737
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111973737
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
111973737
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
LSM_int_assoc
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
RRM_occluded
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
RRM_11
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
111973737
NCBI-ProteinID:
XP_023856890
LinkDB
All DBs
Position
LG15:complement(25392814..25406691)
Genome browser
AA seq
957 aa
AA seq
DB search
MAATGDAEETQVQEMEEEAGMENEMDSDEEEGLGIENSDDEIDDSSEDEKETEAEIQRLE
EQLSINAFDYNCHVDLIKLLRQEGELPRLRKARQKMSELFPLTEEIWLDWLKDEIHLTEE
EPNREKVYELFETAVKDYICPEIWLEYAQYSIGGMGLPGGMEKVRSIFERALTAVGLHMT
KGATVWEAYREFENAILATVQPPPGSVPTREQQELLNTQLERIHTLFRRQLSIPLMDMDG
TYAEYEEWSDQGVSDTVSQKYKRALKQMEKSKPYEETLMIAEPPKLAEYQTYIDYEQKEG
DPARIQIIFERALSENCLVPDMWAKYTKYLDRQLKIKDLVLSSHDRAVRNCSWTMGLWKN
YLLALERHGADHHTISDVFEKALNAGFIQATDYVNIWEVYLDYLRRRVDFSKGESTLTLE
SSRELEELRAAFTRSLDYMKQDVEERFSESGDPSCTIMQVWAKIEALHCKNMQKARELWD
SIMTKGNAKFANMWLEYYNLERSYGDALHCRKALHRAVQCTSDYPEHVCEVLLTFERVEG
SLEDWDAAVQKTETRLNRVNEQRSKVTEKEAHVARQEEEKTEQRRRAKADKKNQKKGQKG
SRPGDKRKAEDKKYEDEWGEESEQPPKRHRGESDQGFRGGGGGAGLIGTESGLFGRRAPP
GRRQEPPGAKRGQQVAPATVWKTQEDDPELRKDDCSVFISNLAFTMDDPEKRLKKLFEPC
GPVQSVRPVYAAKGFRGYCYVQFEGKASVLEALKMDRQEVEGRPMFVSPCVDKNKNPDFK
VFKYNTNLEKHKIFISGLPFSCTKEQLEELCKDHGTIKDIRLVTNRSGKPKGLAYVEFGD
EAQASQAVLKLDGTVLQEHTLSVAISNPPSRNTADKPGFSRPVGAMMPRSMVYGSRGKGR
TQLSLLPRSLNRQTGSESKAENGTAPKPTGGASGDAGIEAQAKPLSNSDFAKMLFKK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgggggacgcagaggagactcaggtgcaagagatggaggaagaggcaggg
atggaaaatgaaatggattcagatgaagaggagggtttgggaattgaaaattccgacgat
gaaatagacgattcatcagaagacgaaaaagagactgaagccgaaattcagcgtttggag
gagcagctgtccatcaatgcttttgattacaactgtcatgtggacctcataaaactcctg
aggcaggagggggagctgcctcggctgcgtaaggcaaggcagaagatgagtgagctcttc
ccactcactgaagagatttggctggactggctcaaggatgagatccacctaacagaagag
gagccgaaccgggagaaagtctatgagctctttgagacggctgtgaaagattatatctgc
cctgaaatctggctggaatatgcccaatactctatcgggggcatgggactgcctggtggg
atggagaaggtgaggtccatcttcgagagagccctgacagccgtggggctgcacatgacc
aagggagcgacagtgtgggaggcctacagggagtttgagaatgccatactggcaactgtt
cagccgccccctggcagcgttcccacccgcgagcagcaggagcttctgaacactcagctc
gagcgcatccacactctgttccgccgccagctgtccatccccttaatggacatggacgga
acatatgcagagtatgaggagtggtctgaccagggggtgtctgatacagtctcccagaag
tacaagagggccctgaaacaaatggagaagagcaagccttatgaggagactctgatgata
gccgagccgcccaagctggcagagtatcagacttacattgactatgagcaaaaggagggt
gacccagcacggatccaaatcatctttgagcgggcattgtcagaaaactgcctggtacca
gacatgtgggcaaagtacaccaaatacctggaccgccaactgaagatcaaagacctcgtc
ctgtcctctcacgaccgtgcggtcaggaactgctcctggacaatgggcctgtggaagaac
tacctgctggccctggagaggcatggggccgaccaccacactatctcagatgtttttgaa
aaggccctgaatgctggtttcatacaagccacagattatgtgaatatctgggaagtgtac
ctcgattacctgaggcggcgcgtcgatttcagcaaaggtgaaagcaccttaacattggag
tcgagcagagagctggaggagctgcgggcagccttcacccggtctctggactatatgaaa
caggatgtggaagagaggtttagtgaaagtggagacccctcttgtactatcatgcaggtc
tgggcaaagatagaggccttgcattgtaagaacatgcagaaggccagagaactgtgggac
agcatcatgacaaaagggaacgccaaattcgccaacatgtggttggagtactataacctg
gagaggtcgtatggagacgctctccactgcaggaaagccctccacagggctgtccagtgt
acctccgactacccagagcatgtgtgcgaggtcctgctcacctttgagagggttgagggt
tctctggaggactgggatgcagcggtgcagaagactgagacacggctgaacagagtcaat
gagcagaggtccaaggtgacagagaaagaggcccatgtggctcgacaggaggaggagaag
actgaacagcgacggagggccaaggcagacaagaagaaccagaagaagggccagaaaggc
agcaggcctggtgacaagaggaaggcagaggacaagaaatacgaggatgagtggggagag
gaatcggagcaacctccaaagaggcacagaggggagagcgaccaaggcttcaggggggga
ggcggtggtgctgggttaattgggacagagagtgggctgtttgggaggagagcccccccc
ggccgcagacaggaaccccctggtgctaagaggggccagcaggtggcaccagccaccgta
tggaagacccaggaagacgaccccgagctacgcaaggacgactgcagtgtgtttatcagt
aacctggccttcaccatggacgatccagagaagaggctgaagaagttgtttgagccctgt
ggtcctgtccagtcggtgcgccccgtctatgctgccaagggcttcagagggtactgctac
gtacagtttgagggcaaggcgtctgtgctcgaggccctgaagatggaccggcaagaggtg
gaaggcaggcccatgttcgtatcaccctgtgtggataaaaacaagaaccctgattttaag
gtgtttaagtacaacacaaacctagagaaacacaagatctttatctcgggcctgcccttt
tcctgcaccaaggagcagctagaggagttgtgcaaggatcatggcaccattaaagacatc
cgcttggtcaccaaccgctcaggcaaacccaagggtctggcgtacgtggagtttggggat
gaggctcaggcctctcaggccgtgctgaagttggatggcacagtactacaggaacacaca
ctctctgttgccattagcaacccgcctagcagaaacactgccgacaagcctggcttcagc
agacccgtgggagccatgatgccccggtctatggtctatggatcgaggggaaaagggcgc
acccagctctcactactccctcgttcactaaatcggcagactggatcagaaagtaaagca
gagaatgggactgcacctaaacccacaggtggcgcatctggagatgctgggattgaagca
caagccaagcccttgtctaattcagactttgcaaaaatgcttttcaaaaagtga
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