Salvelinus sp. IW2-2015 (Arctic char): 111973799
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Entry
111973799 CDS
T05762
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha
KO
K08524
retinoid X receptor alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04148
Efferocytosis
salp04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111973799 (rxra)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
111973799 (rxra)
03320 PPAR signaling pathway
111973799 (rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111973799 (rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111973799 (rxra)
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
111973799 (rxra)
Nuclear receptors [BR:
salp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
111973799 (rxra)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
111973799
NCBI-ProteinID:
XP_023856981
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Position
LG15:complement(8901468..8937250)
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AA seq
511 aa
AA seq
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METKPFLSFGFLKSQCSIAPPPQRWCPGETGGSPTACLCFTGICPLHQHRRPTDPSGQLS
SPSLSSHHAHRGMGAHPLHPSLLIPSSVSSSGPPHSPICTLSSPITSLALPFSVSSRPAG
HHSTSSSMGFSPQLSFPVISSGSSIISTEDIKPPLGRNRVLKDPAQPTCTCLSLNKHICA
ICGDRASGKHYGVYSCEGCKGFFKRTVRKELMYTCRDNKDCLIDKRQRNRCQYCRYQKCL
AMGMKREAVQDERQRAKERRESEADSLGCANEDMPVERIEEAELAVEPKTKTYIKGSLGV
PTNSPNDPVTNICQATDKQLFTLVEWAKMIPHFSELALDDQVILLRAGWNELLIASFSHR
SITVNDSILLANGLQVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLF
NPDSKGLSNPGEVETLREGVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKFLEHL
FFFKLIGDTPVDTFLTEMLEAPHQMTKQHCS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcctttcttttggcttcctcaagagccagtgctcgatagcccca
cctcctcagcgatggtgtccgggggagacgggcggctcgcccacagcatgcttgtgcttc
acaggcatttgcccacttcaccagcacaggagacccacagacccctccggtcagctgtcc
tcaccatcgctcagctcacaccacgcccataggggaatgggtgctcaccccttgcaccca
tctctgctcatcccgtcctctgtgagctcctcaggccctccacactcacccatctgcacg
ctgagctcgcccatcaccagcctggctttgcccttttctgtcagcagccgtccagcggga
caccactctacctcctccagcatgggcttcagcccgcagctcagcttcccagtgatctcc
agtggcagcagcattatcagcacagaggacatcaaacccccactgggccgaaacagagtg
ctaaaggatcctgctcagcccacatgcacctgtctctcccttaacaaacacatctgtgcc
atctgtggagaccgcgcctcaggtaaacactatggagtatatagctgtgaaggttgcaag
ggcttcttcaagagaacagtgaggaaagagctgatgtatacctgtcgagacaacaaggac
tgtctgattgacaagcgccaacgcaaccgatgtcagtactgccgctaccagaagtgtctg
gccatgggcatgaagagagaagctgtgcaggacgagcgccagagagctaaggagaggcgc
gagagtgaggcggactcgttaggttgtgctaatgaggacatgcctgtggagaggatagag
gaggcagagctcgccgtggagccaaagaccaagacatacatcaaggggagcctgggcgtg
cccaccaactcacccaatgaccctgtgaccaatatatgccaggcaacagacaagcagctc
tttaccttggtggagtgggccaagatgatcccccacttctcagagctggccctggacgac
caggtcatcctcctaagagcagggtggaatgagctcctcatagcttctttctcccatcgc
tccatcactgtgaacgacagcattctgctggcaaacggactccaagtgcatcgcaacagc
gcccacagtgcaggggtgggggccatctttgacagagtgctgactgagctggtgtctaaa
atgcgagacatgcagatggacaagtctgagttagggtgccttcgagccatcgttctcttc
aacccagactccaaaggcttgtcaaacccaggggaggttgagactctcagagaaggggtg
tatgcttcactggaggcatactgtaaacacaaataccccgaccaaccaggaagatttgcc
aaactgttacttcgattgccagccctacgttccattggcctcaagtttctggagcacctg
ttcttcttcaaactgataggggatacacccgttgacacattcctcacggaaatgttggaa
gctccacaccaaatgacgaaacagcactgcagttaa
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