Salvelinus sp. IW2-2015 (Arctic char): 111973858
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Entry
111973858 CDS
T05762
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111973858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111973858
03036 Chromosome and associated proteins [BR:
salp03036
]
111973858
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111973858
Coactivators
SAGA/TFTC/STAGA complex
111973858
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
111973858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
111973858
NCBI-ProteinID:
XP_024003277
LinkDB
All DBs
Position
LG15:complement(65327683..66074932)
Genome browser
AA seq
991 aa
AA seq
DB search
MASTSDLLEDMLFSEVDEKAVSDLVGSLESQLVRQSNPVDTQSENRGAGSTVTAKHHLGK
TLPAQVGNVTTLVQQQQQGQHKAGMHQEMNSKQIILEKTVTSSSLSSIPSFEEASTTSGT
GVNATKSGLQSHGTSSITTVPASGGVATYPLVNSISSSTSRGSALASGQTSTDIVDHPRK
RITASLRNASVGIQSLNGTGGAVPSRNNPPAAGTDALISSASAANSSRTVDVTSCVNTTN
FTLSNSSISSTQSAISLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGPITC
AAASQVNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVINSVSSPSAVFNLAAATTASHVM
AKPAVNVVGQTTTVGMVRPASPSVATATQPLLRPGVTAAQRIVAPQLIVRPPQQQQTTIQ
LPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNISPRTATPTAGATFRAT
TPQSPVTSQAIRPCPPPVQAKMVPSPSPTPSPVLQISSSTARPSKGPLAPAVAVTAPQQA
PVVMAPQVQAGAQAASQPALPPQTSAPVAPGASVISQEMQENVKKCKNFLATLIKLASHN
SPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSSPQPYLVPFLKKSLPALRLSLLN
IQHSLIQPLPQAKATPXTGTSSAIMAGPAVRGXLPNSVSTTGASVGAQGHTAALGIKQVG
SAGCQVRMPMVITPLRTQGTVSKGATFQAGKSPVGFAVKGSGNQKNKLNDPGGGSFRDDD
DINDVASMAGVNLNEESARILATNSELVGTHIRSCKDEAFLHPGLLHRRILETAKKFGVS
EVPMEAVNFISHATQSRLRTVLEKVSSIAQHRMDGGKDEEGFEQSADVRSQLKFFEQLER
IEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQEIALVRQRDANLTALAAI
GPRKKRKMDSPGATPSGTEVRPEPPYKVSNC
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctcagacctactggaagatatgctattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttagacaaagcaaccctgtagat
actcagtcggaaaacagaggtgctgggtctacagtcactgcaaagcatcacttagggaaa
acgctaccagcccaagtgggtaacgttactacactagtacagcagcagcaacaaggacaa
cataaagctgggatgcaccaggagatgaactctaaacaaattatcttagagaaaactgtt
acatcttcttcgctgagttctattccgtcctttgaggaagcttccaccacttcagggact
ggagtaaacgctaccaagagcggtttgcaatcacatggaacatcatctatcacaacagta
cctgcatctggtggtgtagcaacttatccgcttgtcaacagcatcagcagcagcaccagc
cgaggttccgctctggcttcaggtcagacatcaacagacattgttgatcatccaagaaaa
cgtataactgcatcgttacggaatgcatccgtgggaatacagagtttgaacggtaccgga
ggagcggtaccgtcaaggaataatccccctgcggcgggaactgatgcgttgattagcagt
gcaagtgcagcaaactcaagtcggaccgttgacgttacatcttgtgtaaatacaacgaat
ttcactttatctaactccagcatttcttcaactcaatcagcgatttccctggataagggg
actcctactattgctttgcaaagactaccaagtcacattgtagcgagcatcgcacataat
ggaaatggcactaccgtctcggccttggttaaacaaggcgcgataggaccgatcacctgt
gcagcagcttcgcaagtgaaccacaaaaaggagggttctgaagcgaagtcggacgctccc
gtacagtccaaaatagtcatgtccagtccgttaggtgttgtcaattccgtaataaactct
gtttcctctccctctgctgttttcaacctagcagcggcgactactgcaagtcatgttatg
gcaaagcctgcagtcaatgttgttggacaaacaacaacggttggaatggtaaggccagcg
tcaccgtctgtggccacagctacacagcctctgcttcgaccgggagtcacagcggctcaa
aggattgtagccccccagctgattgtcagacccccccaacaacaacagacgaccattcaa
ctgcctcctgggtttaccatcccaccgggaatggtgttggtgcgcactgagatgggtcag
ctggtgatggtcccacagcaggcccttgcccaggcacaggcccaagcccaggcccaggcc
cagaacaacatctccccccgaactgccacccccactgcaggggccaccttcagagcaact
accccacagtctcctgtgacctctcaggctattcggccatgtcctcctcctgtccaggcc
aagatggtgccgtctccctctcccactcctagtcctgtcctccagatctcctcctccact
gcgcgaccttctaagggccccytggcgccggctgtggcagtgacggctccccaacaggcc
cccgtggtgatggccccccaggtccaggctggggcccaggctgcctcgcagccagccctg
cccccacagaccagcgcccctgtagccccaggagcctctgtcatctcccaggagatgcag
gagaatgtgaagaagtgtaagaacttcttggccaccctgataaagctggcttcccacaac
tctccgtcacctgagacctccaaaaatgtcaagtcactggtccaggatctactggatgct
aagattgagcctgaggagttcaccaacagactgcagtcagagctcaagtcgtctcctcag
ccctacctggtccccttcctcaagaaaagcctcccggccctgcggctgtctctgctcaac
attcagcattccctgatccagcctctgccgcaggccaaagccacccccarcacaggcacc
agctctgccatcatggccggcccagctgtccgcggcrgcctccccaacagcgtcagcacc
acgggggccagtgtcggggcccagggacacacagctgcrctgggtatcaagcaagtgggc
tccgctggttgccaggtcaggatgcccatggtgatcacaccattaagaacacaaggcact
gtcagcaagggagccacgttccaagcaggcaaaagtcctgtgggttttgccgttaagggc
tctggaaatcagaaaaacaagctgaacgatcccggaggcggttctttcagggatgatgat
gacattaacgatgtggcgtccatggcgggggtgaacctgaatgaagagagcgctcgtatc
ctggccaccaactctgagctggtgggaacacacatccgctcctgtaaagatgaggccttc
cttcacccgggcctgttacacagacgcatcctggagacagctaagaagtttggcgtgtca
gaggttcctatggaggctgtgaacttcatctcccacgctacccagtcccgactccgcact
gtgctggagaaggtctcctccatcgcacagcacaggatggacggcggtaaagatgaggag
gggtttgagcagtcggcagacgtgcggtcgcagctaaagttctttgagcagctggagagg
atagagaagcagaggaaggatgaacaggagagagagatcctactcaaagcagctaaaagt
cgctccaggcaagaggacccagagcaggctcggctgaaacaaaaagctaaggagatgcag
caacaggaaattgccctggtgaggcaacgagacgcaaacctgaccgcgctagctgccatc
ggacctcggaagaaacgcaagatggactcgccaggggccacgccgtcagggaccgaggta
agaccggagcccccctataaagtctccaactgctag
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