Salvelinus sp. IW2-2015 (Arctic char): 111973956
Help
Entry
111973956 CDS
T05762
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111973956
Transcription factors [BR:
salp03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
111973956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Telethonin
HTH_37
HTH_5
Motif
Other DBs
NCBI-GeneID:
111973956
NCBI-ProteinID:
XP_023857194
LinkDB
All DBs
Position
LG15:17613080..17638091
Genome browser
AA seq
512 aa
AA seq
DB search
MEGEERKWGPGRLTNLQNELIWALLGSGLSREVLVQALEELEQERVTPGAEKGDRGDGES
SEEGEXDFPPPIFQELEALPSEEAARQRALVDQLLQEDPWHVAKLVKSYMQQHNLPQREV
VESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGKISQQFTNASHALGTGEEQGED
IRKGRRNRFKWGPASQQILFHAYERQKNPSKEEREGLVEECNRVECLQRGVSPSQLAGLG
SNLVTEVRVYNWFANRRKEEAFRHKLALDTPYTSQSASTTNHTLSHSPVQGMKYSQQIPC
DSLGSARGRSGDRGLGGRLASTIQLEPSHTLLETHYHKLVSGGGPLPPVSTLTSLHSLSA
SPSPPQGLVMASLPSTMSLGESSLLIGQTVPVINNMGGGFTTLQPISFQQQLTQQFQNHM
GHSPFMATMTGLPCHMYSKSDMFPYPPSSLLSQAMIVTDSSSLGTLTSLSAVRQILTTDP
EEETEPIQDDSLHLQSPSPVPVSSGNLELYPP
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaatggggccctgggcgtctgactaatctccagaatgagctt
atctgggcactgctgggctctggactgtcccgggaggtcctggtccaagcactggaagaa
ctggagcaagagagggtcacccctggagcagagaagggggacaggggagatggagagagt
tcggaggagggagaaatkgattttccaccaccaatattccaggagctggaggcactaccc
tcagaggaggcagccagacagagggctctggtcgaccaactgctgcaggaggatccatgg
catgtggcaaaactggtgaagagctacatgcagcagcataacctcccccagagagaggtg
gtcgagtccacaggcctcaaccagtcccatctctcccaacacctcaacaaaggcacaccc
atgaagaaccagaaacgggctgctctatacagctggtatgtcaggaagcagggcaagatt
agccagcagtttaccaatgccagtcatgcccttgggaccggagaagagcagggagaggac
ataaggaaaggacggaggaacaggttcaaatggggacccgcctcccagcaaatcctattc
cacgcctatgaacgacagaagaacccaagtaaagaggagagagagggattagtggaggag
tgtaacagggttgagtgtctccagaggggtgtgtctccatcccagctggctggactgggc
tctaacctggtgacagaggtacgagtgtacaactggtttgctaaccgccgcaaggaggag
gcattccgccataaactggctctcgatacgccttacaccagccaatcagcaagcaccacc
aaccacactctctcacacagccctgtgcaaggcatgaagtacagccagcaaatcccatgt
gacagtctgggatcagcgaggggtcgcagtggagaccgaggcttgggaggccgcctggcc
agcaccatccaacttgagcccagccacacactcctggaaacacactatcacaaactagta
tcaggaggtggtccattgcccccagtaagcaccctgacctcactccacagtctgtctgcc
tcaccttctcccccccagggactcgtcatggcctccttgcccagcaccatgagtctggga
gagtcctctctcctcataggtcaaacagtacctgtcatcaacaacatgggaggcgggttc
accacccttcagccaatctctttccagcagcaactcacacagcagtttcagaatcatatg
ggccacagtcctttcatggcaaccatgacagggcttccatgtcacatgtacagcaagtcc
gatatgtttccctaccctccgtccagcctactgtcccaagccatgattgtcactgacagc
agcagccttggaacactgaccagtctaagcgcagtcagacagattctgacaacagaccct
gaggaggagacagaacccatccaggatgactccctacacctgcaatccccttcacctgtg
ccagtttcctctgggaacttagagttgtatcctccatga
DBGET
integrated database retrieval system
