Salvelinus sp. IW2-2015 (Arctic char): 111974071
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Entry
111974071 CDS
T05762
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111974071 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111974071 (ttc37)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111974071 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_14
TPR_19
TPR_17
TPR_8
TPR_11
TPR_12
TPR_9
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
Fis1_TPR_C
HAT_PRP39_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
111974071
NCBI-ProteinID:
XP_023857356
LinkDB
All DBs
Position
LG15:complement(6913574..6945338)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQSDFKAELPKVYQKLIELYESSDKTKCYEVIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGADKAELLQLWQQMTCLLSDSMEEHDNETQQ
HLIAAFQKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKMKEACESILALYPSQTFPL
EILGAHHLKSGLCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGPGEEALGQKLLRLRLEALVRTED
EHTADQALESLSQLSDASNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVAKDQGRARGCYKRAFELDSNDAESGAASVDLSMKEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARGLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKASVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTSLEVLHDLAGLALAYCRAGLIPESISAYEKALMVAS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVDQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVLANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMAKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMAA
RETRRLLERLVYFPSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDGRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggccctaaaacactgcaaggctgccctgaagctagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccaatcggattttaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaagtgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctgacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggaacacgacaatgagactcagcag
cacttaattgcagcctttcagaaggccatggttctctccgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctatcacaactttcgcatgaagagtgt
aaaatgaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcagggctctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtgggcctggagaa
gaggcactgggacaaaagctcctgaggctgagactagaggcccttgtgaggactgaggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgccagcaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggccatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccaaggaccagggtcgagctaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaaggagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggaaagttcaaagaggctgctgcagagtacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggccttggggagtgtctgctgtccttggccagaggcctgatggaggac
tatagagatggaggagccatagacctcatccaacaggccatccagtacctcttcagggct
gtagagctgcggccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccagggccaccttctcaaccagggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaatgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagccagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcagtacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctgaagaaacaggcagtgctggct
taccagagagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacatctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtggcctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactctgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggctggtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccttgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgtggcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgctctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctctctggctccacccctggcagacgaggcttggagcag
gtgctcatggctgtggtgtcagagaaagtgcggaatgtggaggaggtggaccagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtccagtgccggt
actgccctgccagcttccgtcctggagcagctcagcagtgccgtcttagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgaccttcacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatggcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctactacacttcgccaccaagatggccgcc
agggagacgaggcgtctgttggagaggctggtgtacttcccctcccaaggttacccagag
acggtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagacggcagactgctggag
ttccacacacggctcacctcttgctga
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integrated database retrieval system
