Salvelinus sp. IW2-2015 (Arctic char): 111974252
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Entry
111974252 CDS
T05762
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04145
Phagosome
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111974252
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111974252
09144 Cellular community - eukaryotes
04510 Focal adhesion
111974252
09142 Cell motility
04820 Cytoskeleton in muscle cells
111974252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111974252
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111974252
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111974252
Membrane trafficking [BR:
salp04131
]
Endocytosis
Phagocytosis
Opsonins
111974252
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111974252
Exosomal proteins of colorectal cancer cells
111974252
Exosomal proteins of bladder cancer cells
111974252
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111974252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
COMP
EGF_3
cEGF
EGF
EGF_MSP1_1
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
111974252
NCBI-ProteinID:
XP_023857689
LinkDB
All DBs
Position
LG15:complement(26822944..26835570)
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AA seq
947 aa
AA seq
DB search
MGVWIRKVVLSLLMLQLATTVTAQGIVYDLLVSPDCLPDLTQGGLKNKGLDEAFLLSSFR
LHSKSPSHLYSIINPRDNSKYLEFTLQAKLNKVTIRYQKTDGRAGTTSFSHPSLADGKEH
HVMIHASGLQRGPGRMAVYVDCRLAHTVDELPAAFGTLTPGHNKVALRTLQPTGQDELTD
LKLVIEDTLDNVATLQDCSIQQSESLGTIQLLGLQAGGQDPSQMLELHKMMSEMKDLLLQ
QIKETTFLRNTISECLACGLGGNMASGPGTGARSGPFQCSPGMCFNQDMCIPAEGGRFTC
APCPDGYTGDGVHCDDVNECQFKPCFSGVRCVNTAPGFRCERCPLGYTGLEINGVGVSYA
QSHKQVCDDIDECQGPPDNGGCTANSHCHNTRGSFRCGECKSGFSGDQVSGCSGERLCGN
GQPNPCDSNAQCVVERDGSVSCHCDIGWAGNGYVCGKDTDIDAYPDEKLRCRDNNCKKDN
CAFVPNSGQEDADRDGLGDACDDDADSDGIVNIEDNCWLHPNVNQKNSDKDLHGDACDNC
LTTENPDQRDTDKDGLGDDCDDDMDGDGLKNILDNCQRVTNLDQRDRDNDGVGDACDSCP
DMVNPNQSDVDDDLVGDTCDTNIDSDGDGHQNTKDNCPTVINSSQLDTDKDGQGDECDDD
DDNDGILDQADNCRLVVNPDQTDEDNDGVGDACAGDFDQDKVIDRIDNCPENAEVTLTDF
RAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTM
TDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQAVPFRAVAEPGIQLKAVKSKTGPGEYLR
NSLWHTGDTNDQVRLLWKDKRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGPNLVADSGV
KIDNSMRGGRLGVFCFSQENXIWSNLKYRCNDTIPEDYQEYSAQNTE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgtggatcagaaaagtggtcctctctctgctgatgctacaactggccacgact
gtcacagcacaaggcattgtgtacgacctgctggtgtctccagactgcttgcctgacctg
acgcagggagggctgaagaataaaggtctggatgaggccttcctcctctcctccttcagg
ctccatagcaagtccccctctcatctctacagcatcatcaacccccgggacaacagcaag
tacctggagttcaccctgcaggccaaactcaacaaggtgacgatccgttaccagaagact
gatggtagggctggcaccaccagttttagccacccctctctggcggacggcaaagagcat
catgtgatgatccatgccagcggtctgcagagaggaccaggtcgtatggcggtctacgta
gactgtagactggctcacactgtggacgagctgcctgctgccttcgggacgctgacacct
ggacacaacaaggtggcgctcaggaccctgcagcccaccgggcaggatgagttgacggac
ctgaaactggtgatagaggacacgttagataacgtcgctacgctccaggactgcagcata
cagcagagcgagtctctgggtactattcagctactgggcctccaggcaggcggacaggat
ccgtctcagatgttagagctccacaagatgatgtcagagatgaaggacctgctcctccag
cagattaaagagaccacattccttagaaacaccatctcagagtgtctggcatgtggtctg
ggtggcaacatggcgtcaggcccaggtacaggtgcacggtcaggcccgttccagtgtagt
ccaggtatgtgtttcaatcaggacatgtgtatcccggccgagggaggacgcttcacctgc
gccccctgccccgacggatacactggagacggagttcactgtgatgacgtgaacgagtgc
cagtttaaaccttgcttctccggtgtgaggtgtgtgaacacagctcctgggttccgctgt
gagagatgccctctgggatacactggtcttgagatcaacggagtgggagtgtcctacgca
cagtcacacaaacaggtgtgtgatgacatagatgaatgccagggtcctcctgacaacgga
ggctgcaccgccaactctcactgccacaacaccaggggttcattccgctgtggggagtgt
aagagtggcttctctggggaccaggtgagcggctgcagtggggagaggctctgtgggaac
ggccagcccaacccctgtgacagcaatgcacagtgtgtagtggagagagacgggagtgtt
agctgccactgtgacatagggtgggcaggtaacggctatgtgtgtgggaaggacacagac
atcgatgcttacccagacgaaaagctgaggtgcagggacaacaactgtaagaaggacaac
tgtgcgtttgttcctaactctggccaagaggacgcagacagggacgggctcggggacgcc
tgtgatgatgacgctgatagtgacggcatcgttaacatagaggataactgttggctgcat
cctaacgtgaaccagaagaacagcgataaggatctccatggcgacgcgtgtgacaactgc
ttgacgacggagaaccctgatcaacgagacacggacaaggacgggctaggcgatgactgt
gacgatgacatggatggagacggcctgaagaacattctggataactgccagcgtgtgacc
aacctagaccagagagacagagacaacgatggggtgggagacgcctgtgacagctgtcct
gacatggtcaaccccaaccagtcagatgttgatgatgatcttgtaggagacacatgtgac
accaacatagacagtgatggggacggtcaccagaacactaaggacaactgtcctacagtc
atcaactcctcccagctggacacagataaggacggacagggagacgagtgtgacgatgac
gatgacaacgacggtatcctggaccaagcagacaactgcagactggtggtcaaccctgac
cagacagatgaggacaatgacggcgtgggtgatgcgtgtgcaggggactttgaccaggac
aaggtgattgacaggatagacaactgtccagagaacgctgaggtcaccctgactgacttc
agagcctatcagacggtagtactggaccctgagggtgacgcccagattgatcccaactgg
gtggttctcaaccagggtatggagatagtccagactatgaactctgaccctggcctcgct
gtaggctacacagcgttcagtggggtagactttgaggggacgttccacgtgaacacgatg
actgatgatgactatgcaggcttcatcttcggctaccaggactcctcctccttctacgtg
gtcatgtggaaacagactgaacagacctactggcaggctgtacccttcagagctgtggct
gagcctggcatacagctcaaggcggtgaagtctaagacaggtccaggggagtatctgagg
aactccctgtggcacacaggagacaccaacgaccaggtacgtctgctgtggaaggacaag
aggaacgtgggctggaaggacaaggtgtcctaccgctggtatctacagcacagaccacag
gttggatacatcagggcgcgtttctatgagggtcccaacctggtagcagactctggggtg
aagatagacaacagtatgcgaggagggagactgggcgtcttctgtttctcccaggaaaac
atkatctggtccaacctcaagtaccgctgcaatgacaccatccctgaagattaccaggag
tacagtgcccagaacactgaataa
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