Salvelinus sp. IW2-2015 (Arctic char): 111974817
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Entry
111974817 CDS
T05762
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111974817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111974817
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
111974817
SSDB
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Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
111974817
NCBI-ProteinID:
XP_023858600
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Position
LG15:complement(60781050..60787968)
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AA seq
230 aa
AA seq
DB search
MSSVPAPNRSSAGWPRGVSQFGGNKYMSAPAKPLSLERTINLYPLTNYTFGTKEPLYEKD
SSVAARFQRMREEFDKLGMRRAVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELSPGEDE
VDGLKRLMTEILGRQDGVKQDWVIDDSIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV
QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgtgcctgctcccaatcgttcatccgccggctggccgcgcggggtcagtcag
ttcggcgggaacaaatacatgagcgcgcctgcaaaaccactcagcctggagagaaccatt
aatttataccctctcaccaactacacatttgggaccaaggagcctctgtatgagaaggac
agttcagtggcagcacggttccagaggatgcgggaggagtttgacaagctgggcatgcgg
agggcggtggagggagtgcttattgtccatgagcacaggttgccccatgtactgctgttg
cagctgggaaccaccttcttcaaactgccaggtggagagctgagcccaggggaggatgag
gtggatgggctgaaacgcctgatgacagagatcctgggccggcaagacggggtgaagcag
gattgggtgatcgatgactccatcggaaactggtggcgccccaactttgaacccccacag
tatccctacattccagcccacatcactaaacccaaggagcataaaaagctcttcctggtt
caactgcaggaaaaagctctgtttgcagtcccaaagaactacaaactggtggcagcccct
ctgtttgagctttatgacaacgcccccggctatgggccaatcatatccagcctaccgcaa
ctactaagcaggttcaactttatctacaactaa
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