Salvelinus sp. IW2-2015 (Arctic char): 111975636
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Entry
111975636 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 24-like
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
salp01002
]
111975636
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111975636
Enzymes [BR:
salp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
111975636
Peptidases and inhibitors [BR:
salp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
111975636
Ubiquitin system [BR:
salp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
111975636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
UCH
UCH_1
UCH_UBL1
DUF3517
UBA
ubiquitin
UBA_7
Motif
Other DBs
NCBI-GeneID:
111975636
NCBI-ProteinID:
XP_024003334
LinkDB
All DBs
Position
LG16:24461226..24498121
Genome browser
AA seq
2617 aa
AA seq
DB search
METEEEQHTTTLLCMGFPDPVAIRKALRLAKNDINEAVALLTNESPGLGYGYEPMESGPA
PGPCGEGETTGRTGTGGFDPPPAYHDVVESERNNDENGNCSGSSMEFPTTNLYELESRVF
TDHWSIPYKREESLGKCLVAATCLAKHGLADADENCKRFMDRCMHEAFKKLLTSSAVHKW
GTEIHEGIYNMLMLLVELVAERVKQEPIPVGLMGVLAMAFNPDNEYHFKNRMKACQRNWS
EVFGEEAMFAVSPSNNYQKEPHGWLVDLVNLFGEMGGFTAIQAKLNTEEIEIGCVSALVQ
PLSVCAEYLNSSLVQPMLDPVIHKMITYVQNLEEKDLKDKRLVSIPELLSAIKLLCMRFQ
TALVTVVDDLRLDTLLRMLKTPHFSTKMNSLKEVTKLIEESTVSKTVKNAIDTDRLLDWL
VENSVLSIALEGNIDQAQFVSNKRHHWLLGSKLSLDELSKIWMIQAGQSSTVIENIHTIM
AAAAVKFNFEQLSHLFVLIQKSWEVESEPVXGRSCSVXIGRIGREARSEATQGRXAEVLW
ELAHLPTLPTSLVQQASEEHLAILTDAYAVKETVKRCYIIKCIEDIKKTQTEEEGKTSDT
QTSFLTGSWGKKKAKENSLAKSSQQGSPQAVWVVPALRQLHEITRSFIKQTYQKQDKSII
QDLKKNFEIVKLITGSLVVCHRLAVSAAGNNGLTGHTLVDGRYTYQEYLDGHLRFLAFFL
QEASLYLVWNRAKELWDCLVSGPEVCELDREMCFEWFTKGQHDLESDVQQQLFKEKILKL
EPYEITMNGFNLFKTFFENVNLCDHRLKRQGTQLCVERLDLAGMDFIWRIAMETPDEEIA
NEAIQLIITYSYTNLNPKMKKDSVSLHKKFIADCYKRLEAASSALGGPTLTHAVTRATKM
LTATTMPTVATSVQSPSRSTKLVIIERLLLLAERYVITIEDLYSVPRTILPHGASFNGHP
VSLHVTYESTKDTFTLEAHSNETIGSIRWKIAEHLNCPVDNVQIFANDSVLTMNRDQKLL
SQLGFSDEQSLTVKSSGTGTPSGGSSESSVSASSSSSAVFNSAYAMEQEKSLPGVVMALV
CNVFEMLYQLANLDEPRITLRVRKLLLLIPTDPEVQDALDNFVPKESSVWSHQKTLFTLG
QGSGSRSPSLGSKQQHQPSAASILESLFRSSAPGMSTFRVLYNLEVLSSKLMPTSDDEMA
KTSVKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVGQSMPS
LLDDDVIREGDTLSSRPFRNAGRPGRQLSLCGTPEKSSYRQMSLSERSSIRVEEIIPAAR
VAIQTMEXGDFTSTVACFMRXTWAAAAARLISSAVLSQSDLNTAHILPLVVRSRVSSTGS
NCSSSSEGEAPPTALHAGRCVKQQSVSIKDCIIAXESPVSTVTCLQLRTQQLGSFYNLPC
GSDXIIDILLGSASGEIRRVACDQLYTLSQSDTSAXPXDHQAQRVLLRVVLTSQLPSGSP
TSVMRGVNQRLLSQCTEYFELRCQLLDDLTSSEMEVLSVSAAAMLEDEISWLDNFEPSWS
SEMETSEADNILQAGHLRLIKTLLSLCGTEKEHLGPSLIQQLLDDFLFRASRIILNTSDP
ASSSPPSHDFHPKCSTASSRLAAYEVLVMLADSSVANLQLITRELLSMHHQSDPSLSKEF
DFLPPVDSCSVSGFVGLKNGGATCYMNAVFQQLYMQPGLAEAFLSIEDDTEQPDESVFCQ
VQSLFGHLMESKLQYYVPENFWKIFKMWNKELYVREQQDAYEFFTSLVDQLDEHLKKIGR
EQIFKNTFQGIFSDQKICKDCPHRYEREETFMALNLGVTSCQSLEISLDQFVRGEVLEGT
NAYYCEKCKEKRTTVKRTCIKSLPSVLCIHLMRFGFDWESGRSIKYDEQIRFPWVLNMEP
YTVSGMARQDGGAEGGDGRGEAGGSPRKKVTISENYELVGVVVHSGQAHAGHYYSFIKDR
RSARGRWYKFNDNVVEEFDMNDETLEYECFGGEYRPKVYDQSNPYPDVRRRYWNAYMLFY
QRISDQNSPVLPKKSRVSAMRQEAEDLTLSAPSSPDVSPQSSPRPPRANNDRLSVLTRLV
RKGEKKGLFVEKMPARIYQMVRDENLKFMKNRDVYNSDYFNFTLSLASVNATKLKHPAYQ
AMARESLQLAVHFLFHTYLHTKKKLRVDTEEWMATVEVLLSKSSEACHWMAQYLVGPEGR
EITKVCLLECGVREVRVVVAAILEKTLESALHFTDSGLDSLTDALLSLLDKDVPENVKHC
NQYFSLFSNFAQRGSGPCQLLLKHSAYRRMLIFLLGPNRQNNQNRRWSPAQAREFLHLHS
TLALMTLHSDLNTQHTHDQGVCKLNVSSVPASSTLLQLNADIMASLFTHEGQPYLLEVMF
AVRELSGPLTVLIEMVTYCSFCNEPFSLGVLQLLKTQLETAPPHELKNVFQLLQELLVVE
DPLQTQRLKYAFESEKGLLALMHQSNNVDSSRCYQCVKFLVTLAQKCVPAKDYFKDLSGH
WSWAVQWLQKKMSEHYWTPQSNVSNETSTAKTFQRTISAQDTLAYATALLNEKEPSGSSN
GSDGSPANENADRSLRQGSESPMMLGDSKSDLEDVDP
NT seq
7854 nt
NT seq
+upstream
nt +downstream
nt
atggagacagaagaggagcaacacacgacgaccctcctctgcatgggtttcccagatccc
gtggctatacgcaaggcgctacgcctggcgaaaaacgacatcaacgaggctgtggcgctc
ctgaccaacgaaagccccgggcttgggtatggatatgagccgatggagagtggccctgcc
ccgggcccatgcggagaaggggagaccaccgggcggactgggactggagggttcgaccca
cctcccgcttaccacgatgtggtggagagcgagaggaataatgatgagaatgggaactgt
tctgggagcagtatggagttccccaccactaacctgtatgaactggagagcagagtgttc
actgaccactggtccatcccctacaagagagaggagtcactgggcaaatgtctggtcgca
gccacctgcctagccaaacacggtctggcagatgcagatgagaactgtaagcggtttatg
gaccggtgtatgcacgaggcctttaagaagctcctgaccagtagtgcggtccataagtgg
gggacagagatccatgaggggatctataacatgttgatgttactggtggaactggtggct
gagagggtcaaacaggaacccatacctgttgggctaatgggagtactggctatggccttt
aacccagacaatgagtaccactttaagaaccgtatgaaggcgtgtcagaggaactggagc
gaggtgtttggagaggaagccatgttcgctgtttcgcctagcaacaactaccagaaggag
cctcatggctggctggtagacttggtcaatctgtttggagagatgggagggttcactgct
atccaggctaaactcaatacagaggagatagagatcgggtgtgtgtctgctctggtccag
cctctatctgtgtgtgcagaatacctcaactccagccttgtgcagcccatgttggatcct
gttatccataagatgatcacctacgttcagaaccttgaggagaaagatctcaaagacaag
aggctggtgagcatcccagagctgctgtcggccatcaagctgctgtgtatgaggttccag
accgccctggtaactgttgtggacgacctgcgcctggacactctgctacgcatgttgaag
actcctcacttttccaccaaaatgaactccctcaaagaggtgactaagctgattgaggag
agtactgtgtctaagacggtgaagaatgccattgacacagacagactgctggactggctg
gtggaaaactctgtcctctcaatagcactggagggtaacatagaccaggcccagtttgta
tcgaataaaaggcatcattggttgctgggcagtaaactgtctctggacgagctctccaag
atctggatgatacaggcaggacagtcgtccacggtgattgagaacatccacaccatcatg
gctgcagctgccgtcaagttcaacttcgagcagctcagccacctgtttgtccttatacag
aagagctgggaggtagagagtgaaccggtgtgaggcagaagctgctcagtctgaatcggg
aggattggtagagaggcccgctctgaggccacacagggaaggnntgctgaggtgctgtgg
gagctagcccacctgccaaccctgcccacctccctggtacagcaggcgtctgaggaacac
ctggccatcctcactgatgcatacgctgtgaaggagactgtcaaacgctgctacatcatc
aaatgtatagaggacattaagaagactcagactgaggaggagggtaaaaccagcgacact
cagacctcatttcttactggctcctggggcaagaagaaagccaaagaaaactcattggcc
aaatcttctcaacagggcagtccccaggcggtctgggtggttccagctctgcggcagctc
catgagatcacacgctccttcatcaaacagacctaccagaaacaggacaagagcatcatc
caggacttgaagaagaactttgagatcgtcaaactgattacaggatctctggtggtctgc
catcgactagcggtgtctgccgctgggaacaacggactgaccggacacacactagtggat
ggacgatacacctaccaggagtatctagatggccacctgaggttcctggccttcttcctc
caggaggcgagcctctacctggtctggaacagagccaaagaactatgggactgcctggtc
tctggacccgaagtctgcgagctggacagagagatgtgttttgagtggttcactaagggc
cagcatgatctggagagtgatgttcagcagcagctcttcaaagagaagatcctcaaactg
gagccctacgagattactatgaatggctttaatctgtttaagaccttctttgagaatgtc
aacctgtgtgaccatcgcttgaaacggcaggggactcaactgtgtgtggagcggctagac
ctggctgggatggactttatctggcgcatcgccatggaaacgcctgatgaggagatcgct
aacgaggccatacagctaatcatcacatacagctacaccaacctcaaccccaagatgaag
aaggattctgtgtctttacacaagaagttcattgctgattgttacaaacgactggaggcg
gccagttcagctctaggagggcccacgttgactcatgctgttaccagggcaaccaagatg
ctgaccgccaccaccatgccgactgtagccacgtctgtccaatcaccttccaggtccacc
aagctggtgatcattgagaggctgctgctattggctgagcgttatgtcatcactatcgag
gacctgtattctgtgcctcgtaccattctacctcacggagcgtcgttcaatggccaccct
gtctctctgcatgtcacctatgagtccaccaaagacaccttcaccttggaggcccacagt
aacgagactataggcagcatccgctggaagattgctgagcatctcaactgtccagtcgac
aacgttcagatctttgccaacgacagcgtgttgactatgaaccgggaccagaagctgctg
tcccagctggggttcagtgatgagcagtctctgacagtgaagagctctggcaccggcacg
ccctctggtggcagctcagagtcctccgtctccgcttcctcctccagctccgctgtcttc
aactcagcctatgctatggaacaggagaagtcccttccaggtgttgtcatggcgttggtg
tgtaatgtgtttgagatgctctaccagctggccaacctggacgaaccacggataactctg
cgtgtacgtaagctgctgctgctgatcccaacagacccagaggttcaggacgctctagat
aactttgttcccaaagagtccagtgtctggagtcaccagaagacattgttcaccctgggt
caggggtcaggctctcggtctccgtctctgggttctaagcaacagcaccagcccagtgct
gcctccatcttggaatcactcttcagatcctctgctcctgggatgtccaccttcagagtc
ctctacaacctggaggtgttgagttctaagttgatgccaacctcagatgatgagatggct
aagaccagtgtcaagtctttctgtgagaacttcctgaaagcaggaggactcagtttggtg
gtgaacgtgatgcagcgggactctattccctctgaggtggactatgagaccagacaggga
gtctactccatctgtctacaactggccaggttcttattggttggccaaagtatgccgtcg
ttgctggatgatgatgtcattcgagagggcgacacgctatctagtcggccattccgtaac
gcagggcgaccggggagacagctgtcgctgtgtggaacgcctgagaagagctcctataga
cagatgtctctgtctgaacgctcctccatcagagtagaggagatcatccctgctgcacgt
gtagctatacagacgatggagntgggggacttcacctcgacggtggcgtgtttcatgcgc
ntaacctgggcagcagccgccgcccgattgatctcgtcggcagtcctcagccaatcagac
ctgaacacagctcacatcctccccctcgtggtccgcagccgtgtcagcagcactggaagt
aactgcagctccagcagtgagggcgaggcgccgcccactgcgttgcatgctggaagatgt
gtgaagcagcagagtgtttcaattaaagactgcatcattgctnnagagagccctgtctct
actgtcacctgcctacagctacggacacagcagctagggtcattctacaacctcccctgt
ggcagcgacntcatcatcgacatcctgctgggatcagccagtggagagatccggcgcgtg
gcgtgtgaccagctgtacactctgagccaatcagacacgtctgctnngccctgagatcat
caagcccaacgtgtcctgctgcgagtcgtcctcacctcccagctgccctctggaagcccc
acctctgtcatgagaggagtcaaccagaggttgctgtctcagtgtactgaatactttgaa
ctgcgatgtcaactactggatgacctgaccagttcagagatggaggtgttgtcagtgagt
gcagcagccatgttggaagatgagatcagctggttggataactttgagcccagctggagc
tctgagatggagactagcgaggctgacaacatcctgcaggctggacacctccgcctcatc
aaaacactactgtcactctgtggcaccgagaaggaacacctgggtccctctctgatccag
cagctgttggatgacttcctgttccgagcgtcccgcatcatcctgaacacgtctgacccc
gcctctagttccccccccagccacgacttccaccccaagtgcagcacggccagcagcaga
ttggcagcctacgaggtgctggtgatgctggcagacagctctgtggccaacctacagctt
atcaccagagaactgctgtccatgcaccaccagtcagacccctcgctcagcaaggagttt
gacttcctcccgccggtggacagttgttctgtgtcagggttcgtagggttaaagaacggt
ggagccacctgctatatgaatgctgtattccagcagctgtacatgcagcctggcctggct
gaggcctttctgtctatagaggacgacacggagcagccagacgagagtgttttctgtcag
gtccagtctctgttcggacacctgatggagagcaagctgcagtactacgtccctgagaac
ttctggaagatctttaagatgtggaataaggagctgtatgtacgggagcagcaggatgcc
tatgagttcttcacttcactggtggaccagttggacgagcacctcaagaaaatcggccgt
gagcagatcttcaagaatactttccagggaatcttctctgatcagaagatctgcaaagac
tgccctcaccggtatgagcgagaggagacgtttatggcgctgaacctgggtgtgacttcc
tgtcagagtctggagatctcattggaccagtttgtcaggggggaggtgctagaaggaacc
aacgcctactactgcgaaaagtgcaaggagaagcgtaccacagtgaagcggacctgcata
aagtccctacccagtgttctctgtatccatctgatgcgcttcggtttcgactgggagagc
ggacgctccatcaaatatgacgagcagatcaggtttccctgggtgctgaacatggagccc
tacacagtgtctggcatggctcgtcaggatgggggtgcggaggggggagacggccggggc
gaggcagggggctcacccaggaagaaggtgaccatctcagagaactacgaactggtggga
gttgtagtccacagtggacaggcacacgctggacactactactccttcatcaaggacaga
cgcagtgctaggggaaggtggtataagtttaatgacaacgtggtcgaggagtttgatatg
aatgacgagactctggagtacgagtgctttggaggagagtaccggcctaaagtctacgac
cagtctaacccctaccctgacgtgcggcggcggtattggaacgcctacatgttgttctac
cagaggatcagtgaccagaactctcctgttctccccaagaagagcagagtcagcgccatg
aggcaagaagcagaagacctcacactttcggcaccctctagcccagatgtcagtccccag
tcgtcccctcggcccccaagggccaacaatgaccgtctctctgtcctgacccgcctcgta
cggaagggagagaagaaaggactgtttgtggagaagatgcctgctaggatctaccagatg
gtgagagatgagaacctgaagtttatgaagaacagagatgtgtacaacagcgactacttc
aacttcactctgtcattggcctccgtcaacgcgacaaagctgaagcacccagcctaccag
gccatggccagagagagtctccagttggcggtccacttcctgttccacacctacctccac
accaagaagaagctgcgggtagacaccgaggagtggatggctacggtggaggtgctgctg
tctaaaagcagtgaagcctgtcactggatggctcagtacctggtgggacctgagggacga
gagatcaccaaggtgtgtctgttggagtgcggggtgagggaggtgagggtcgtagtggca
gccatcttggagaaaaccttagagagtgcgctccacttcactgactctggattggacagc
ctgaccgatgcgctcctctccctattggacaaagacgttcctgagaacgtcaaacactgc
aaccaatacttcagcctcttcagcaactttgctcagaggggctctggtccgtgccagttg
ttgttgaaacactcagcgtatcgcaggatgctcatcttcctcctcgggcccaacagacag
aacaaccagaatcggagatggagtccagcccaggccagagagttcctgcacctgcactcc
actctggccctgatgactctccactcagacctcaacacacagcacacacatgatcaaggt
gtctgtaagctgaatgtgagcagtgtccctgcctcctccaccctcctccagctcaacgct
gacatcatggcctcgctcttcacccacgagggacagccttacctgctggaggtgatgttt
gccgtgcgggagttgtccggccctctgactgtgctgatagagatggtgacgtactgctcc
ttctgtaacgaacccttctccctgggagtactacagctgctcaagactcagttggagacc
gctccgccccatgagctgaagaacgtgttccagctgctgcaggagctgctggtggtggag
gatcctcttcagactcagagactgaagtacgccttcgagtcagagaaaggcctgctagca
ttgatgcaccagagtaacaatgtggacagcagccgctgctatcagtgtgtcaagttcctg
gttaccctggcacagaagtgtgttcctgctaaggactattttaaagatctgtctggtcac
tggagctgggcagtgcaatggctgcagaaaaagatgtcggaacactactggactcctcag
agcaacgtgtccaatgagacgtccacagccaaaacattccagcgcaccatctcagcccag
gacacgctggcctacgccacagcactgctcaacgagaaggagccgtctggcagcagcaac
ggctctgacggcagcccagccaacgagaacgccgaccgcagcctccgacagggttccgag
tctcccatgatgcttggtgattcaaagagtgatctggaggatgttgacccttag
DBGET
integrated database retrieval system
