Salvelinus sp. IW2-2015 (Arctic char): 111975936
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Entry
111975936 CDS
T05762
Name
(RefSeq) thrombospondin-4-like
KO
K04659
thrombospondin 2/3/4/5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04145
Phagosome
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111975936
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111975936
09144 Cellular community - eukaryotes
04510 Focal adhesion
111975936
09142 Cell motility
04820 Cytoskeleton in muscle cells
111975936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111975936
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111975936
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111975936
Membrane trafficking [BR:
salp04131
]
Endocytosis
Phagocytosis
Opsonins
111975936
Exosome [BR:
salp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111975936
Exosomal proteins of colorectal cancer cells
111975936
Exosomal proteins of bladder cancer cells
111975936
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111975936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
EGF
Motif
Other DBs
NCBI-GeneID:
111975936
NCBI-ProteinID:
XP_023860376
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Position
LG16:complement(9903948..9917563)
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AA seq
682 aa
AA seq
DB search
MLRILVLVISLSVSSDLVAGQRDGEIINQIKGTNQALAEIIELLKQQIQYIVFLKNTVMK
CKACGMQGPPRTSCDPNLCHMGVKCIETAGGIKCGPCPEGMEGNGTHCTHVDECVLKPCH
MGVRCINTSPGFRCGPCPTGYTSPRVQGIGLSYATNNKQVCKDINECEGPKNGGCMENSN
CLNTPGSFKCGPCKAGYVGDQRKGCKPERACGNGQPNPCHASGECIVQRDGKIECQCGVG
WAGNGYFCTSDIDIDGFPDEKLECTERNCAKDNCLTVPNSGQEDADKDGKGDACDEDADG
DGILNTQDNCVLVPNVNQRNVDEDDFGDACDNCRMIKNNDQKDTDIDRLGDECDEDIDGD
RIPNNLDNCKRVPNANQKDRDGDKVGDACDSCPYVQNPDQLDMDNDLIGDPCDTNKDSDG
DGHQDSQDNCPAVINSSQLDTDKDGLGDECDDDDDDDGIPDLLPPGPDNCRLIPNPLQED
SDGDGVGNVCENDFDNDTIIDSIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVL
NQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMW
KQVEQIYWQANPFRAVAEPGIQLKAVKSNTGPGENLRNSLWHTGDTSDQVKLLWKDVRNV
GWKDKTSYRWFLQHRPQDGYIR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggattctggtgttggtgatttcgctgagtgtgagcagtgaccttgtagctggt
cagagagatggggaaatcattaatcagatcaagggaacgaatcaagccttggcggagatt
atagaactgctgaagcaacagatccaatatattgttttcctgaagaacacagtgatgaag
tgtaaagcrtgtggcatgcaaggtccccctcgcacctcctgtgaccctaacctctgccac
atgggggtaaagtgcattgagaccgccgggggcatcaagtgtggcccctgccctgagggc
atggagggcaatggtacccactgcacacatgtggatgagtgtgtcctgaagccctgccac
atgggtgtgcgctgcatcaacacctctccagggttccgctgtggcccctgtcccactggc
tacaccagcccccgggtgcagggaataggcctctcctacgccactaacaacaaacaggtc
tgtaaggacatcaatgagtgcgaaggacccaagaatggaggttgtatggaaaattccaac
tgtctgaacacacctggctcgtttaagtgtggcccctgtaaggcaggctatgtgggggat
caacgcaagggctgtaagcctgagagagcgtgtggtaatggccagcccaacccctgccat
gccagcggagagtgcattgtccaacgagatgggaaaatagagtgtcagtgtggggtggga
tgggctggcaatggttacttctgcacctctgatattgacattgatggcttccctgatgag
aaactggaatgcaccgagaggaactgtgccaaggataactgtctaacagtacccaactct
ggccaagaggatgcagacaaggatggcaaaggagatgcctgtgatgaggatgcagatggc
gatggwatcctaaatacacaggacaactgtgtgctggtgccaaatgtcaaccaaagaaat
gtggacgaagatgactttggagacgcctgtgacaactgccgtatgatcaaaaacaacgac
cagaaagacactgatattgatagactgggtgacgaatgtgacgaagacattgatggcgac
agaatccccaataatctggacaactgcaaaagggttcccaatgctaaccagaaggatcga
gatggggacaaagtcggagatgcttgtgacagttgcccctatgttcaaaaccctgaccag
ttggatatggacaacgatttgatcggagacccttgtgacaccaataaggacagtgatggt
gacggtcaccaggactctcaggacaactgccctgcggtcatcaacagctcccagctggac
acggacaaggacggtctgggggacgagtgtgacgacgatgatgatgatgatggtattcct
gaccttctgcccccaggaccggacaactgtcgccttatccccaaccctctgcaggaggac
tctgacggtgatggtgttgggaatgtgtgtgagaacgactttgacaacgacaccatcatt
gacagcatcgatgtgtgcccggagaacgccgaggtcactctcacagacttcagggcrtac
cagacagtggtgctggacccagagggagacgcacagatagaccctaactgggtggtgctc
aatcagggaagagagatcgtccaaactatgaacagtgaccctggactggctgttggttac
acagcgttcaacggtgttgacttcgaagggacgttccatgtgaataccgtaacggacgac
gactatgcagggttcatctttggctaccaggactcttcctccttctacgtggtgatgtgg
aaacaggttgagcaaatctattggcaggccaatccattcagagctgtggcagaaccaggg
atccaactgaaggctgtgaagtccaacacgggaccaggggagaatctacgcaactccctg
tggcacactggggacaccagtgaccaggtgaagctgctgtggaaagacgtccgcaacgtg
ggctggaaggacaagacttcctaccgctggttcttgcaacacaggccccaagatggctac
atcaggtag
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