Salvelinus sp. IW2-2015 (Arctic char): 111976286 Help Entry 111976286         CDS       T05762                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism salp  Salvelinus sp. IW2-2015 (Arctic char) Pathway salp04510   Focal adhesion salp04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:salp00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     111976286  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     111976286  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:salp00536]     111976286 Glycosaminoglycan binding proteins [BR:salp00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    111976286 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  111976286 NCBI-ProteinID:  XP_023860847 LinkDB All DBs Position LG17:12373490..12400462 Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGIPGNPGTPGPPGPNGPPGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGTAGARGNDGLPGPAGPPGPVGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPQGAPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGESGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGTQGLQGPRGLPGTP GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGSAGKDGPKGVRGDSGTPGRQGDAGLRGAAGSPGEKGDAGEDGLP GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ NLTYHCKNSVAYMDASTGNLKKGLLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccacgtggcgattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcatccccgggaaccccggaacccctggc ccacccggacctaacggacctccaggccttggcgggaactttgctgctcagatggctggt ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccacctggcccttctggagcccctggcccacaaggtttccaaggt aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct ggagccaaaggtgagggtggtgctcccggagagaacggcgcgcctggaccaatgggacca cgtggtctgcctggcgagagaggccgtcccggaccttctggaactgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccggccctgttgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggcgcacagggaccccgtggggaggctggtacacccggatctcctggacccgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct ggaattgctggtgcacctggtttccccgggccccgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctataggtccccaaggtgcccctggccctgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt tctaagggagcccctggtgaccgtggtgttcccggtgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagtctggtcttcctggagccagaggtctcactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggacggt cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgg caaggtctgataggtctggctggtaaagatggtgagactggcgctgctggacctctcggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgccggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctactggacccagaggcgagcgtggtttccctggt gagagaggcggtgctggaactcagggtctgcagggacctcgtggacttcctggaactccc gggagtgatggaccgaagggagccattggcccagctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggagcttctggaaaagatggttctaga ggtttgactggtcccattggtcctccyggcccagctggtcccaacggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtcctcccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcccaacggtaaccctggtgctgctggccccgctggttctgctggtaaa gatggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg ctgcgtggagctgctggatcccctggcgagaagggagatgctggagaggatggtctccct ggtcctgatggcccttcaggtccccagggtctggctgggtcacgtggtattgttggtctg cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgatcgtggaccccctgggcctgtggggcctcct ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggtgcccctggcgctcccggtgcccccggccctgttggccctctgggcaagcag ggagacagaggagagggaggtgcccaaggacctgccggacccgctggaccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccagatcccctgaggtacatgagagctgatgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaatgtgcctcaaaagaactggtggacaagcaagagcaaggaccgcaaa cacgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggatggt accaacgctgccagtatccagctgaccttcctgaggctgctgtccacagaagcatctcag aacctcacttaccattgcaagaacagcgtggcctacatggacgcatccaccggcaacctg aagaagggtctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggagcggaccaggagttcggtgtggatgtgggcgcagtctgcttcttg taa

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