Salvelinus sp. IW2-2015 (Arctic char): 111976466
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Entry
111976466 CDS
T05762
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04120
Ubiquitin mediated proteolysis
salp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111976466
04120 Ubiquitin mediated proteolysis
111976466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111976466
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111976466
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
U-box type E3
111976466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
111976466
NCBI-ProteinID:
XP_023861066
LinkDB
All DBs
Position
LG17:36390466..36460168
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AA seq
1364 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGATPQPFPPAASHALG
LNVQSVTPATSPMGASGVVYRSQSSEGVSSLSSSPSNSLXTQSLSRSQSMDIDTASCEKS
SISQVDVDSGIENMEVEDSDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDR
DVIFLPSLAAEFHQSSPKEVYSDFKDLIGQILMEVLMMSTMSHIHNPFGSLTATSQPIAA
AKSPDHHLTLVQPSSQGGSPMATSAGSFGASSLSSLYGCSPHPLALNPARMTSPSLPAST
PSSPHPMVAPSPPTMANSSRLSLSAPLPVSQRYRPYSVTSPSGFSTPPCPTLASLAGFSS
VPGTVPACFPVPPIALSQAPAPRLPTTPQSVLLPSPRPRPPSSMPLPLVPTSPRAASRQA
ARIPSSPLSFLFFTLSDMSQDSSDEEDEQEEDFSQFQFGSSLGVSAGGMDSQSCNDCFSI
EACMETEMLNYLIERFDSAGMEESKAPKICSHPGVSQLLSNIRSQCISHAALVLQGALTQ
PRSPLQQSLLVPYMLCRNLPYGFIQELACMTHQEEVFRQIFVPILQGLALAVKECSFDSD
NFKFPLMALAELCEIKFGKTHPMCNLMTSLSLWCPKSLGPGMGREVQRLSFLGAFFSLSV
FAEDDTKVSDKYFSGPAITMENIRVGSQTLQHYLESARGDLFKILHNILLNGETREVVLN
YMAALVNRNVKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLETVDPYYIFDPRCRLQ
VSREETRLKATMEELNTWLAEIHDPSKFYDPKFPTECFFLTLHTHHLSILPGCRRYIRRL
RAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVCSKACADAGLLDENLL
RRCLQFYSMVIQLILRMVDPAYPHITLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSP
QVLYEPCVQNIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRISEMMENHP
LSVKHLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSG
KQFVRYINMLINDTTFLLDESLESLKRIHEVQEEVKNKEQWDQLPREQQQSRQSQLTQDE
RVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVEN
PEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTIT
IEKFKLLSEKVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVILPSGNIMDRAIILR
HLLNSPTDPFNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccgacgagatccgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacacgcactggga
ctcaatgtccagagtgtcacccccgccacctctcctatgggcgcctctggtgtggtgtac
cgcagtcagagcagcgagggtgtgagctccctctccagctctccctccaacagcctggmg
acccagagtctatccagatctcagagtatggacatcgacactgcctcctgtgaaaagagc
agcatatcccaagtggatgtggactcagggatagagaacatggaggtggaggacagtgac
cgcagggagaggaggaacctggctgaaaaggaatccgctgaaacctcagatgtctctgaa
gagcaggctctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacaga
gatgtcatctttctcccctcgcttgccgcagagttccaccagagcagccccaaagaagtc
tactctgacttcaaagacctgattggccagatcctgatggaggttctcatgatgtccacc
atgtcgcacatccacaaccccttcggcagcctgactgccacgtcccagccaattgctgct
gccaaatctcccgaccaccacctgacgctggttcagccctctagccagggcggcagtccc
atggccacctctgcaggctcatttggggccagctctctgtccagcctatacgggtgtagt
ccacacccactggctttgaacccagccaggatgacctctccatctctacctgcctccacc
ccctcctccccacatccaatggtagccccaagtccccctactatggccaactcctctagg
ctctctctctccgcccccctgcccgtctcccagcgctaccggccctactctgtcacctct
ccctcagggttctccacccccccttgccccactctggctagcctcgctgggttttcctcc
gtccctggcactgtccctgcatgtttcccagtaccgcccatcgccctgtcccaggcgcca
gccccaagactaccaaccactccccagtcggttctccttccctcccccagacctcgcccg
cccagctccatgccactccctctggtgcccacctcgcccagagcagcttcccgacaagct
gcccggatcccttctagccccctctcctttctgttcttcaccctctctgacatgtctcag
gacagcagcgacgaagaggatgaacaggaggaggatttttcgcagtttcagtttgggtcc
agtctgggtgtgtctgcagggggaatggactcgcaatcctgcaacgactgcttctccatc
gaggcgtgcatggagacagagatgctcaactacctcatcgagcgcttcgacagtgcaggc
atggaggaaagtaaggcgcccaagatttgcagccaccccggtgtcagccagctcctcagc
aacatacgctcacagtgcatttcccatgccgctcttgtccttcagggcgccctcacgcag
cccaggagccccctgcagcagtccctgctggtgccctacatgctgtgccgaaacctgccg
tatggctttatccaggagctggcctgcatgacccaccaggaggaggtctttagacagatc
ttcgttccaatccttcaagggctggctctggctgtgaaagaatgttccttcgacagtgac
aactttaagttccccctcatggctttagctgagctctgtgagatcaagtttgggaagact
caccccatgtgcaatttgatgacatctctgtccctgtggtgtcccaagtctctgggcccg
gggatgggccgagaggttcagagactgtccttcctgggagcattcttcagcctgtcggtc
tttgcagaagatgacaccaaagtgagtgacaagtacttctcgggcccagccatcaccatg
gagaacattcgcgtgggtagccaaaccctgcagcactacctggagtcagcccggggtgac
ttgtttaagattctccacaacatcctactaaatggagagacaagagaggtagtgctcaac
tatatggcagctctggtcaaccgcaatgtgaagaaagcccagatgcagacagacgacaag
ctggtgtccacggacggcttcatgattaacttcctgtcggtgctgcaacagctgagcatg
aagatcaagctggagacggtggacccgtactacattttcgacccacgctgccgcctgcag
gtcagccgtgaggagacccggctcaaggccaccatggaagagctcaacacctggctggcc
gagatacatgacccctccaagttctatgatcccaagttccccacagagtgtttctttctg
acgctgcacacccaccacctgtccatcctaccaggctgccgacgctacatccgcaggctg
agagccattcgcgagctcaacaggacggtggaagagctgaagaatagtgagagccagtgg
aaggactctcccctggccagccgacaccgagagatgctgaagagatgcaaaacccagctc
aagaaactggtgtgctccaaagcctgtgccgatgcgggtcttctggatgagaacctgtta
cgcagatgtctgcagttctacagtatggtcattcagctcatcctacgcatggtggatcct
gcctacccacacataactctaccactgaatcccgagatccccaaaagctttgctgctctg
ccagagttttacattgaagatgtggctgagttcctgctttttgttgtgcagtattcccct
caggttctgtatgagccctgcgtccagaacattgtcaccttcctggtggtgttcatctgc
agtcagaactacatccggaacccctacctgatcgccaagctggtggaggttctgtttgtc
accaacccagctgtgcagccgcgcacccagcgcatctctgagatgatggagaaccaccca
ctgtccgtcaaacatttggtcccggccctcatgaagttctacactgacgtggagcacacc
ggtgccaccagcgagttctatgacaagttcaccatccgctaccacatcagcaccatcttc
aagagcctctggcagaacatgggccaccatggcactttcctggaagagttcaactccggg
aaacagtttgtgcgttacatcaacatgctgatcaacgacaccaccttcctgctggacgag
agcctggagtccctgaagcgcatccacgaggtccaggaggaggttaaaaacaaggagcag
tgggatcagcttcccagggagcagcagcagagccgccagtcccagttgacccaggatgag
cgggtgtcacgctcttacctggccctggctacagagacggtcgacatgttccacatcctc
accaagcaggtccagaagcccttcctccggcccgagttggggcctcgtctggcggccatg
ctgaactttaacctccagcagctatgcgggcccaagtgccgggacctgaaggtggagaac
ccagagaagtacggttttgagcccaagaagctcctagaccagcttactgacatttacctg
caacttgactgtgcccgcttcgccaaggccatcgccgacgaccagcggtcatacagccga
gagctctttgaggaagtgatttccaagatgaagaaagccggcatcaagtccaccatcacc
attgaaaaattcaagctgctatcggagaaggtggaggagatagtcgccaggaactcgcag
tccgaaatggactacagtgacgcacctgacgagtttaaagaccctctgatggacacatta
atgactgaccctgtgatactgccctctgggaacatcatggaccgagccatcatcctccgc
caccttctcaactccccaactgacccctttaacagacagcctctcaacgaaagcatgctg
gagtcactccctgaactgaaggagaggatccaggcatggatgagagagaagcaaggccag
ggacgtttcctctag
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